Patient-Level Indices from the OMOP Common Data Model


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Documentation for package ‘OmopIndices’ version 0.1.0

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addBMI Add Body Mass Index measurement
addCharlsonIndex Add Charlson Comorbidity Index (CCI) value based on Charlson et al. (1987) (doi:10.1016/0021-9681(87)90171-8 <https://doi.org/10.1016/0021-9681%2887%2990171-8>) and Charlson et al. (1994) (doi:10.1016/0895-4356(94)90129-5 <https://doi.org/10.1016/0895-4356%2894%2990129-5>) (age-adjusted) version.
addElectronicFrailtyIndex Add Electronic Frailty Index (eFI) value based on Clegg et al. (2016) (doi:10.1093/ageing/afw039 <https://doi.org/10.1093/ageing/afw039>)
addEthnicity Add the ethnicity of a person to a table
addHospitalFrailtyRiskScore Add the hospital frailty risk score as defined in Gilbert et al. (2018) (doi:10.1016/S0140-6736(18)30668-8 <https://doi.org/10.1016/S0140-6736%2818%2930668-8>)
addIndexOfMultipleDeprivation Add socioeconomic status as a column to a table using the Index of Multiple Deprivation
addLocation Add the location to a table
addPolypharmacyCount Add the maximum number of ingredients to which an individual is simultaneously exposed within a specified window
addSocioEconomicStatus Add socioeconomic status as a column to a table
addTownsend Add socioeconomic status as a column to a table using the Townsend deprivation index
addUpdatedCharlsonIndex Add Updated Charlson Comorbidity Index (CCI) value based on Quan et al. (2011) (doi:10.1093/aje/kwq433 <https://doi.org/10.1093/aje/kwq433>)
getIndexCodelist Get the codelists used for a specified index calculation