Package: BIGpopA
Title: Pedigree Validation Genetic Composition of Diploids & Polyploids
Version: 1.0.5
Authors@R: c(person(given='Josue',
                    family='Chinchilla-Vargas',
                    email='josue.chinchilla@ufl.edu',
                    role=c('cre','aut')),
             person(given='Alexander',
                    family='Sandercock',
                    role=c('aut')),
             person('University', "of Florida",
                    role=c('cph'),
                    comment = "Breeding Insight"))
Maintainer: Josue Chinchilla-Vargas <josue.chinchilla@ufl.edu>
Description: Tools for pedigree quality control and genomic breed/line
    composition estimation in diploid and polyploid breeding populations.
    'BIGpopA' provides functions to check and correct common pedigree
    errors, assign parentage from SNP genotype data using Mendelian error
    rates, validate parent-offspring trios, and estimate genome-wide
    breed or line composition using quadratic programming. Supports both
    diploid and polyploid species. For more details about the included 'breedTools' 
    functions, see Funkhouser et al. (2017) <doi:10.2527/tas2016.0003>.
License: Apache License (>= 2)
URL: https://github.com/Breeding-Insight/BIGpopA
BugReports: https://github.com/Breeding-Insight/BIGpopA/issues
Encoding: UTF-8
Depends: R (>= 4.4.0)
Imports: dplyr, janitor, quadprog, data.table, ggplot2
Suggests: covr, knitr (>= 1.10), rmarkdown, testthat (>= 3.0.0)
Config/roxygen2/version: 8.0.0
NeedsCompilation: no
Packaged: 2026-06-18 20:36:44 UTC; josue.chinchilla
Author: Josue Chinchilla-Vargas [cre, aut],
  Alexander Sandercock [aut],
  University of Florida [cph] (Breeding Insight)
Repository: CRAN
Date/Publication: 2026-06-24 08:20:24 UTC
Built: R 4.5.2; ; 2026-06-24 10:56:30 UTC; unix
