Quick ATAC-Seq QC
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Documentation for package ‘quaqcr’ version 1.0.4
Help Pages
| quaqcr-package | quaqcr: Quick ATAC-seq QC in R |
| footprint | Get transcription factor footprints with quaqc. |
| melt_reports | Melt sections of a quaqc report into a data.frame. |
| parse_quaqc | Parse a JSON quaqc report file. |
| parse_quaqc_file | Parse a JSON quaqc report file. |
| pileup | Generate read pileups from BAMs with quaqc. |
| quaqc | Run quaqc from within R. |
| quaqcr | quaqcr: Quick ATAC-seq QC in R |
| quaqcr-pkg | quaqcr: Quick ATAC-seq QC in R |