BIOMOD.ensemble.models.out
                        'BIOMOD_EnsembleModeling()' output object class
BIOMOD.formated.data    'BIOMOD_FormatingData()' output object class
BIOMOD.formated.data.PA
                        'BIOMOD_FormatingData()' output object class
                        (with pseudo-absences)
BIOMOD.models.options   'bm_ModelingOptions' output object class
BIOMOD.models.out       'BIOMOD_Modeling()' output object class
BIOMOD.options.dataset
                        'bm_ModelingOptions' output object class
BIOMOD.options.default
                        'bm_ModelingOptions' output object class
BIOMOD.projection.out   'BIOMOD_Projection()' output object class
BIOMOD.rangesize.out    'BIOMOD_RangeSize()' output object class
BIOMOD.stored.data      'BIOMOD_Modeling' and 'BIOMOD_EnsembleModeling'
                        output object class
BIOMOD_EnsembleForecasting
                        Project ensemble species distribution models
                        onto new environment
BIOMOD_EnsembleModeling
                        Create and evaluate an ensemble set of models
                        and predictions
BIOMOD_FormatingData    Format input data, and select pseudo-absences
                        if wanted, for usage in 'biomod2'
BIOMOD_LoadModels       Load species distribution models built with
                        'biomod2'
BIOMOD_Modeling         Run a range of species distribution models
BIOMOD_Projection       Project a range of calibrated species
                        distribution models onto new environment
BIOMOD_RangeSize        Analyze the range size differences between
                        projections of species distribution models
BIOMOD_Report           Produce summary outputs from a simulation
                        folder
DataSTOC                Abundance to build test SDM
DataSpecies             Presence-Absence data to build test SDM
ModelsTable             Single models package and functions
ODMAP                   ODMAP empty table
OptionsBigboss          Bigboss pre-defined parameter values for single
                        models
bioclim_current         Bioclimatic variables for SDM based on current
                        condition
bioclim_future          Bioclimatic variables for SDM based on future
                        condition
biomod2_ensemble_model
                        Ensemble model output object class (when
                        running 'BIOMOD_EnsembleModeling()')
biomod2_model           Single model output object class (when running
                        'BIOMOD_Modeling()')
bm_BinaryTransformation
                        Convert probability values into binary values
                        using a predefined threshold
bm_CrossValidation      Build cross-validation table
bm_FindOptimStat        Calculate the best score according to a given
                        evaluation method
bm_MakeFormula          Standardized formula maker
bm_ModelAnalysis        Analyze the residuals of the single models
bm_ModelingOptions      Configure the modeling options for each
                        selected model
bm_PlotEvalBoxplot      Plot boxplot of evaluation scores
bm_PlotEvalMean         Plot mean evaluation scores
bm_PlotRangeSize        Plot species range change
bm_PlotResponseCurves   Plot response curves
bm_PlotVarImpBoxplot    Plot boxplot of variables importance
bm_PseudoAbsences       Select pseudo-absences
bm_RangeSize            Analyze the range size differences between
                        projections of species distribution models
bm_RunModelsLoop        Loop to compute all single species distribution
                        models
bm_SRE                  Surface Range Envelope
bm_SampleBinaryVector   Sample binary vector
bm_SampleFactorLevels   Sample all levels of a factorial variable
bm_Tuning               Tune models parameters
bm_VariablesImportance
                        Variables' importance calculation
getters.bm              Functions to extract informations from
                        'biomod2_model' objects
getters.out             Functions to extract informations from
                        'BIOMOD.models.out', 'BIOMOD.projection.out' or
                        'BIOMOD.ensemble.models.out' objects
load_stored_object      Functions to load 'BIOMOD.stored.data' objects
plot,BIOMOD.formated.data,missing-method
                        'plot' method for 'BIOMOD.formated.data' and
                        'BIOMOD.formated.data.PA' object class
predict.bm              Functions to get predictions from
                        'biomod2_model' objects
predict.em              Functions to get predictions from
                        'biomod2_ensemble_model' objects
setters                 Functions to change the place of the different
                        biomod2 objects
summary,BIOMOD.formated.data-method
                        'summary' method for 'BIOMOD.formated.data'
                        object class
