# Generated by roxygen2: do not edit by hand

export(.transform.outputs.list)
export(.transform_model.as.col)
export(BIOMOD_CrossValidation)
export(BIOMOD_EnsembleForecasting)
export(BIOMOD_EnsembleModeling)
export(BIOMOD_FormatingData)
export(BIOMOD_LoadModels)
export(BIOMOD_Modeling)
export(BIOMOD_ModelingOptions)
export(BIOMOD_PresenceOnly)
export(BIOMOD_Projection)
export(BIOMOD_RangeSize)
export(BIOMOD_Report)
export(BIOMOD_Tuning)
export(BinaryTransformation)
export(Find.Optim.Stat)
export(ProbDensFunc)
export(bm_BinaryTransformation)
export(bm_CalculateStatAbun)
export(bm_CalculateStatBin)
export(bm_CrossValidation)
export(bm_CrossValidation_block)
export(bm_CrossValidation_env)
export(bm_CrossValidation_kfold)
export(bm_CrossValidation_random)
export(bm_CrossValidation_strat)
export(bm_CrossValidation_user.defined)
export(bm_FindOptimStat)
export(bm_MakeFormula)
export(bm_ModelAnalysis)
export(bm_ModelingOptions)
export(bm_PlotEvalBoxplot)
export(bm_PlotEvalMean)
export(bm_PlotRangeSize)
export(bm_PlotResponseCurves)
export(bm_PlotVarImpBoxplot)
export(bm_PseudoAbsences)
export(bm_PseudoAbsences_disk)
export(bm_PseudoAbsences_random)
export(bm_PseudoAbsences_sre)
export(bm_PseudoAbsences_user.defined)
export(bm_RangeSize)
export(bm_RunModel)
export(bm_RunModelsLoop)
export(bm_SRE)
export(bm_SampleBinaryVector)
export(bm_SampleFactorLevels)
export(bm_Tuning)
export(bm_VariablesImportance)
export(calculate.stat)
export(getStatOptimValue)
export(get_optim_value)
export(load_stored_object)
export(makeFormula)
export(models_scores_graph)
export(response.plot2)
export(sample.factor.levels)
export(set_new_dirname)
export(sre)
export(variables_importance)
export(zzz_bm)
exportClasses(ANN_biomod2_model)
exportClasses(BIOMOD.ensemble.models.out)
exportClasses(BIOMOD.formated.data)
exportClasses(BIOMOD.formated.data.PA)
exportClasses(BIOMOD.models.options)
exportClasses(BIOMOD.models.out)
exportClasses(BIOMOD.options.dataset)
exportClasses(BIOMOD.options.default)
exportClasses(BIOMOD.projection.out)
exportClasses(BIOMOD.rangesize.out)
exportClasses(BIOMOD.stored.data)
exportClasses(CTA_biomod2_model)
exportClasses(DNN_biomod2_model)
exportClasses(EMca_biomod2_model)
exportClasses(EMci_biomod2_model)
exportClasses(EMcv_biomod2_model)
exportClasses(EMfreq_biomod2_model)
exportClasses(EMmean_biomod2_model)
exportClasses(EMmedian_biomod2_model)
exportClasses(EMmode_biomod2_model)
exportClasses(EMwmean_biomod2_model)
exportClasses(FDA_biomod2_model)
exportClasses(GAM_biomod2_model)
exportClasses(GBM_biomod2_model)
exportClasses(GLM_biomod2_model)
exportClasses(MARS_biomod2_model)
exportClasses(MAXENT_biomod2_model)
exportClasses(MAXNET_biomod2_model)
exportClasses(RF_biomod2_model)
exportClasses(RFd_biomod2_model)
exportClasses(SRE_biomod2_model)
exportClasses(XGBOOST_biomod2_model)
exportClasses(biomod2_ensemble_model)
exportClasses(biomod2_model)
exportMethods(BIOMOD.formated.data)
exportMethods(BIOMOD.formated.data.PA)
exportMethods(BIOMOD.options.dataset)
exportMethods(BIOMOD.options.default)
exportMethods(bm_BinaryTransformation)
exportMethods(bm_CrossValidation_block)
exportMethods(bm_CrossValidation_env)
exportMethods(bm_CrossValidation_kfold)
exportMethods(bm_CrossValidation_random)
exportMethods(bm_CrossValidation_strat)
exportMethods(bm_CrossValidation_user.defined)
exportMethods(bm_PseudoAbsences_disk)
exportMethods(bm_PseudoAbsences_random)
exportMethods(bm_PseudoAbsences_sre)
exportMethods(bm_PseudoAbsences_user.defined)
exportMethods(bm_RangeSize)
exportMethods(free)
exportMethods(get_built_models)
exportMethods(get_calib_lines)
exportMethods(get_eval_data)
exportMethods(get_evaluations)
exportMethods(get_formal_data)
exportMethods(get_formal_model)
exportMethods(get_kept_models)
exportMethods(get_options)
exportMethods(get_predictions)
exportMethods(get_projected_models)
exportMethods(get_scaling_model)
exportMethods(get_species_data)
exportMethods(get_variables_importance)
exportMethods(load_stored_object)
exportMethods(plot)
exportMethods(predict)
exportMethods(print)
exportMethods(set_new_dirname)
exportMethods(show)
exportMethods(summary)
importFrom(PresenceAbsence,optimal.thresholds)
importFrom(PresenceAbsence,presence.absence.accuracy)
importFrom(abind,abind)
importFrom(abind,asub)
importFrom(dplyr,"%>%")
importFrom(dplyr,count)
importFrom(dplyr,mutate_at)
importFrom(foreach,"%:%")
importFrom(foreach,"%do%")
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(gbm,gbm.perf)
importFrom(gbm,predict.gbm)
importFrom(ggplot2,aes)
importFrom(ggplot2,after_stat)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_errorbarh)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_label)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_raster)
importFrom(ggplot2,geom_rug)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_alpha)
importFrom(ggplot2,scale_alpha_continuous)
importFrom(ggplot2,scale_color_gradientn)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_colour_viridis_c)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_fill_viridis_c)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,scale_size)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,stat_qq)
importFrom(ggplot2,stat_qq_line)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,vars)
importFrom(ggplot2,waiver)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,colors)
importFrom(grDevices,dev.new)
importFrom(grDevices,gray)
importFrom(grDevices,rainbow)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(graphics,plot.new)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,text)
importFrom(methods,callNextMethod)
importFrom(methods,formalArgs)
importFrom(methods,new)
importFrom(pROC,auc)
importFrom(pROC,coords)
importFrom(pROC,roc)
importFrom(reshape,melt.array)
importFrom(reshape2,melt)
importFrom(rlang,.data)
importFrom(rpart,prune)
importFrom(scales,rescale)
importFrom(sp,read.asciigrid)
importFrom(stats,aggregate)
importFrom(stats,as.formula)
importFrom(stats,binomial)
importFrom(stats,complete.cases)
importFrom(stats,cor)
importFrom(stats,formula)
importFrom(stats,gaussian)
importFrom(stats,glm)
importFrom(stats,median)
importFrom(stats,na.exclude)
importFrom(stats,na.omit)
importFrom(stats,poisson)
importFrom(stats,qt)
importFrom(stats,quasibinomial)
importFrom(stats,reshape)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(terra,`add<-`)
importFrom(terra,`values<-`)
importFrom(terra,aggregate)
importFrom(terra,app)
importFrom(terra,as.matrix)
importFrom(terra,as.points)
importFrom(terra,categories)
importFrom(terra,cats)
importFrom(terra,cellFromXY)
importFrom(terra,classify)
importFrom(terra,crds)
importFrom(terra,distance)
importFrom(terra,ext)
importFrom(terra,extract)
importFrom(terra,freq)
importFrom(terra,global)
importFrom(terra,inMemory)
importFrom(terra,is.factor)
importFrom(terra,mask)
importFrom(terra,mem_info)
importFrom(terra,minmax)
importFrom(terra,nlyr)
importFrom(terra,plot)
importFrom(terra,predict)
importFrom(terra,quantile)
importFrom(terra,rast)
importFrom(terra,rasterize)
importFrom(terra,spatSample)
importFrom(terra,subset)
importFrom(terra,terraOptions)
importFrom(terra,unwrap)
importFrom(terra,values)
importFrom(terra,vect)
importFrom(terra,which.max)
importFrom(terra,wrap)
importFrom(terra,writeRaster)
importFrom(terra,xyFromCell)
importFrom(utils,capture.output)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,lsf.str)
importFrom(utils,packageVersion)
importFrom(utils,read.csv)
importFrom(utils,setTxtProgressBar)
importFrom(utils,tail)
importFrom(utils,txtProgressBar)
importFrom(utils,write.table)
importMethodsFrom(methods,show)
