A Tool for Processing and Analyzing Dendrometer Data

Documentation for package ‘dendRoAnalyst’ version 0.1.6

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clim.twd	Calculate relative dendrometer change during adverse climate periods and the following normal phase
clim.twd.stats	Calculate tree-, species-, or site-level statistics from clim.twd output
clim.twd.test	Statistical testing for clim.twd output
daily.data	Daily statistics of dendrometer data
dendro.resample	Resampling temporal resolution of dendrometer and climate data
dendro.truncate	Truncation of dendrometer data
dm.detrend.fit	Detrend and standardize dendrometer series from growth-fit residuals
dm.fit.gompertz	Fitting gompertz function on annual dendrometer data
dm.growth.evaluate	Compare dendrometer growth-fitting methods using fit statistics
dm.growth.fit	Fit dendrometer growth curves by vegetation season
dm.growth.fit.double	Fit bimodal dendrometer growth curves by vegetation season
dm.na.interpolation	Detection and interpolation of missing values in dendrometer data
dm_add_climate	Add climate information to dendrometer outputs
dm_daily_clim	Daily climate summaries for dendrometer analyses
dm_epoch_extract	Build an epoch table around event times
dm_epoch_test	Test superposed epoch composites against a null distribution
dm_event_climate	Extract climate at and before phase events
dm_event_climate_summary	Summarize event-based climate results
dm_event_climate_test	Test differences in event-based climate between groups
dm_event_times	Extract event times from phase.zg() or phase.sc() output
dm_join_daily_clim	Join daily climate summaries to daily dendrometer statistics
dm_join_phase_clim	Join climate summaries to dendrometer phase windows
dm_join_subdaily_clim	Join subdaily climate features to point-level dendrometer output
dm_plot_climate	Plot climate attached to dendrometer outputs
dm_plot_climate_compare	Compare multiple climate variables attached to dendrometer outputs
dm_standardize	Standardize dendrometer series within seasonal years
dm_subdaily_clim	Subdaily climate features for dendrometer analyses
dm_wavelet	Wavelet analysis of dendrometer series
dm_wavelet_coherence	Wavelet coherence between dendrometer and climate series
dm_wavelet_reconstruct	Reconstruct or remove selected cycle components from a dm_wavelet object
gf_nepa17	Dendrometer data of Kathmandu for 2017 with gap filled
i.jump.locator	Removing artefacts due to manual adjustments of dendrometers interactively
jump.locator	Removing artefacts due to manual adjustments of dendrometers automatically for more than one dendrometer
ktm_clim_hourly	Hourly climate data for Kathmandu derived from ERA5-Land
ktm_rain17	Daily rainfall data of Kathmandu for 2017.
mean_detrended.dm	Calculate the mean detrended dendrometer series
mov.cor.dm	Running correlation between dendrometer data and climate
nepa	Dendrometer data from Kathmandu
nepa17	Dendrometer data of Kathmandu for 2017
nepa2	Dendrometer data from Kathmandu version 2
network.interpolation	Interpolate missing dendrometer values using a site network
phase.sc	Application of the stem-cycle approach to classify dendrometer phases
phase.zg	Apply the Zero-Growth (ZG) approach to segment dendrometer data into TWD/GRO phases
plot.clim_twd_stats	Plot method for clim.twd.stats output
plot.clim_twd_test	Plot method for clim.twd.test output
plot.daily_output	Plot method for daily dendrometer statistics
plot.daily_output_clim	Plot climate-augmented daily dendrometer output
plot.dm_detrended	Plot detrended dendrometer series
plot.dm_epoch	Plot a dm_epoch object
plot.dm_growth_evaluation	Plot growth-fitting evaluation statistics
plot.dm_growth_fit	Plot dendrometer growth-fit results
plot.dm_na_interpolation	Plot method for dendrometer NA interpolation results
plot.dm_standardized	Plot method for standardized dendrometer output
plot.dm_wavelet	Plot method for wavelet analysis output
plot.dm_wavelet_coherence	Plot method for dm_wavelet_coherence objects
plot.dm_wavelet_reconstruct	Plot method for dm_wavelet_reconstruct objects
plot.mean_dm_detrended	Plot mean detrended dendrometer series
plot.mov_cor_dm	Plot method for moving dendrometer-climate correlation
plot.network_interpolation	Plot method for network interpolation output
plot.SC_output	Plot method for stem-cycle output
plot.SC_output_clim	Plot climate-augmented stem-cycle output
plot.summary_mov_cor_dm	Plot method for summaries of moving dendrometer-climate correlation
plot.ZG_output	Plot method for zero-growth output
plot.ZG_output_clim	Plot climate-augmented zero-growth output
plot_dm_assessment	Plot interpolation assessment metrics
plot_dm_gaps	Plot detected gaps in dendrometer data
plot_dm_interpolation	Plot original and interpolated dendrometer series
plot_event_climate_box	Plot event-based climate distributions
plot_event_climate_relation	Plot event-based climate-response relationships
plot_mov.cor	Backward-compatible wrapper for plotting moving correlation
print.dm_growth_fit	Print a dm_growth_fit object
print.mov_cor_dm	Print method for running dendrometer-climate correlation objects
print.summary.clim_twd_stats	Print summary of clim.twd.stats output
print.summary.clim_twd_test	Print summary of clim.twd.test output
print.summary.dm_epoch	Print summary of a dm_epoch object
print.summary.dm_growth_fit	Print a summary.dm_growth_fit object
print.summary.dm_wavelet_reconstruct	Print method for summary.dm_wavelet_reconstruct
print.summary_mov_cor_dm	Print method for summaries of running dendrometer-climate correlation objects
read.climate	Read and standardize climate data for dendrometer analyses
read.dendrometer	Reading dendrometer data
reso_dm	Detect Temporal Resolution and Irregularities in Time Series
smooth_dm	Smoothing of Dendrometer Time Series
summary.clim_twd_stats	Summarize clim.twd.stats output
summary.clim_twd_test	Summarize clim.twd.test output
summary.dm_epoch	Summarize a dm_epoch object
summary.dm_growth_fit	Summarize a dm_growth_fit object
summary.dm_wavelet	Summarize a dm_wavelet object
summary.dm_wavelet_reconstruct	Summarize a dm_wavelet_reconstruct object
summary.mov_cor_dm	Summary method for running dendrometer-climate correlation objects
twd.maxima	Locating the maxima of TWD periods