Read Stable Isotope Data Files

---

Documentation for package ‘isoreader2’ version 0.6.1

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

isoreader2-package	isoreader2: Read Stable Isotope Data Files
auto	Automatic / default behavior
c.ir_aggregated_data	Combine aggregated isofile data
c.ir_isofiles	Combine isofiles
get_pkg_options	Package options
ir_add_to_aggregator	Dynamic data aggregator
ir_aggregate_isofiles	Aggregate data from isofiles
ir_calculate_ratios	Calculate isotope ratios
ir_check_isoextract	Check for the isoextract executables
ir_check_isosolfs	Check for the isoextract executables
ir_convert_intensity	Convert intensity between units
ir_copy_examples	Bundled example files
ir_default_theme	Default isoreader2 plotting theme
ir_examples_folder	Bundled example files
ir_export_to_excel	Export data to Excel
ir_extract_isofiles	run the isoextract executable on a vector of file paths this is usually not called directly
ir_filter_for	Filter isofiles by measurement type
ir_filter_for_continuous_flow	Filter isofiles by measurement type
ir_filter_for_dual_inlet	Filter isofiles by measurement type
ir_filter_for_scans	Filter isofiles by measurement type
ir_filter_metadata	Filter, mutate, or join the metadata of isofiles
ir_find_continuous_flow	Find isodat files
ir_find_dual_inlet	Find isodat files
ir_find_isofiles	Find isodat files
ir_find_scans	Find isodat files
ir_generate_cycles_tibble	Generate the tibble used by the plotting functions
ir_generate_scans_tibble	Generate the tibble used by the plotting functions
ir_generate_tibble	Generate the tibble used by the plotting functions
ir_generate_traces_tibble	Generate the tibble used by the plotting functions
ir_get_aggregator	Dynamic data aggregator
ir_get_cycles	Get data frame from aggregated data
ir_get_data	Get data frame from aggregated data
ir_get_isoextract_version	run the isoextract executable on a vector of file paths this is usually not called directly
ir_get_metadata	Get data frame from aggregated data
ir_get_option	Package options
ir_get_options	Package options
ir_get_problems	Retrieve parsing problems
ir_get_resistors	Get data frame from aggregated data
ir_get_scans	Get data frame from aggregated data
ir_get_supported_file_types	Get supported file types
ir_get_traces	Get data frame from aggregated data
ir_get_vendor_data_table	Get data frame from aggregated data
ir_isofiles_storage	Save and load isofiles
ir_join_metadata	Filter, mutate, or join the metadata of isofiles
ir_load_aggregated_data	Save and load aggregated isofile data
ir_load_isofiles	Save and load isofiles
ir_metadata	Filter, mutate, or join the metadata of isofiles
ir_mutate_metadata	Filter, mutate, or join the metadata of isofiles
ir_options	Package options
ir_plot_continuous_flow	Plot continuous flow data
ir_plot_dual_inlet	Plot dual inlet cycle data
ir_plot_scans	Plot scan data
ir_read_isofiles	Read isotope data files
ir_register_aggregator	Dynamic data aggregator
ir_save_aggregated_data	Save and load aggregated isofile data
ir_save_isofiles	Save and load isofiles
ir_show_problems	Retrieve parsing problems
ir_start_aggregator	Dynamic data aggregator
ir_storage	Save and load aggregated isofile data
isoreader2	isoreader2: Read Stable Isotope Data Files