# Tidying, Analysis, and Fast Visualization of Animal and Plant Pedigrees

## Documentation for package ‘visPedigree’ version 1.9.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

as_tidyped | Restore the tidyped class to a manipulated pedigree
big_family_size_ped | A large pedigree with big family sizes
complex_ped | A complex pedigree
deep_ped | A deep pedigree
expand_pedmat | Expand a Compact Pedigree Matrix to Full Dimensions
half_founder_ped | A pedigree with half founders
has_candidates | Check whether a tidyped object contains candidate flags
has_inbreeding | Check whether a tidyped object contains inbreeding coefficients
inbred_ped | A highly inbred pedigree
inbreed | Calculate inbreeding coefficients
is_tidyped | Test if an object is a tidyped
loop_ped | A pedigree with loops
pedancestry | Calculate Ancestry Proportions
pedcontrib | Calculate Founder and Ancestor Contributions
pedecg | Calculate Equi-Generate Coefficient
pedfclass | Summarize Inbreeding Levels
pedgenint | Calculate Generation Intervals
pedhalflife | Calculate Information-Theoretic Diversity Half-Life
pediv | Calculate Genetic Diversity Indicators
pedmat | Genetic Relationship Matrices and Inbreeding Coefficients
pedmeta | Access pedigree metadata from a tidyped object
pedne | Calculate Effective Population Size
pedpartial | Calculate Partial Inbreeding
pedprod | Matrix-Free Pedigree Relationship Products
pedrel | Calculate Mean Relationship or Coancestry Within Groups
pedstats | Pedigree Statistics
pedsubpop | Pedigree Subpopulations
plot.pedhalflife | Calculate Information-Theoretic Diversity Half-Life
plot.tidyped | Plot a tidy pedigree
print.pedcontrib | Print Founder and Ancestor Contributions
print.pedhalflife | Calculate Information-Theoretic Diversity Half-Life
print.pediv | Print Genetic Diversity Summary
print.pedstats | Print Pedigree Statistics
print.summary.tidyped | Print method for summary.tidyped
print.tidyped | Print method for tidyped pedigree
query_relationship | Query Relationship Coefficients from a Pedigree Matrix
simple_ped | A simple pedigree
small_ped | A small pedigree
splitped | Split Pedigree into Disconnected Groups
summary.tidyped | Summary method for tidyped objects
summary_pedmat | Summary Statistics for Pedigree Matrices
tidyped | Tidy and prepare a pedigree
vismat | Visualize Relationship Matrices
visped | Visualize a tidy pedigree
[.tidyped | Subset a tidyped object