Signature Analyzer for Targeted Sequencing (SATS)

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Documentation for package ‘SATS’ version 1.0.11

• DESCRIPTION file

Help Pages

CalculateSignatureBurdens	Calculate signature burdens
EstimateSigActivity	Estimate signature activity
GenerateLMatrix	Generate a sample-level panel-context matrix
GeneratePanelSize	Generate a panel-context matrix
GenerateVMatrix	Generate a Mutation Count Matrix from Mutation Records
MappingSignature	Find a subset of TMB-based catalog SBS signatures
ReadBEDAsPanelInfo	Convert BED Target Regions to SATS Panel Information
ReadVCFAsMutationRecord	Convert a Simple VCF File to a SATS Mutation Record Table
RefTMB	Example Data
SATS	SATS (Signature Analyzer for Targeted Sequencing)
SimData	Simulated example data
ValidateSATSInputs	Validate SATS input matrices