DEPONS2R                Package for analyzing DEPONS simulation output
DeponsBlockdyn-class    DeponsBlockdyn-class
DeponsDyn-class         DeponsDyn-class
DeponsRaster-class      DeponsRaster-class
DeponsShips-class       DeponsShips-class
DeponsTrack-class       DeponsTrack-class
Summary-methods         Summary
ais.to.DeponsShips      Convert ship tracks to DeponsShips object
aisdata                 Position for three ships in the inner Danish
                        waters
argosmetrics            Fine and Large-scale metrics of Argos data
as.DeponsRaster         Convert a RasterLayer into a DeponsRaster
as.data.frame,DeponsDyn-method
                        Convert DeponsDyn object to data frame
as.data.frame,DeponsTrack-method
                        Convert DeponsTrack to data frame
as.raster               Convert a DeponsRaster into a RasterLayer
bathymetry              Bathymetry of the Kattegat area
bbox                    Get bbox from Depons* object
calib_01                Plot distribution of turning angles, step
                        lengths and speed of tracked simulated
                        porpoises.
calib_02                Calculate calibration metrics of previously
                        filtered tracks (fine-scale or large-scale)
check.DeponsShips       Check if ships move at unrealistic speeds or
                        are outside the map boundary
coastline               Coastline of Northern Europe
crs                     Get or set map projection in Depons* objects
dyn                     Extract population dynamics from objects
get.latest.sim          Get name of newest file
get.simtime             Get simulation date
interpolate.ais.data    Interpolate AIS data
interpolate.maps        Interpolate missing entries in a series of maps
landscape<-             Get or set the landscape name
make.DeponsDyn          Make DeponsDyn object from data stored in data
                        frame
make.blocksraster       Makes new file with blocks
make.clip.poly          Make clipping polygon from bbox
make.construction.traffic
                        Generate artificial AIS data representing ship
                        traffic during wind farm construction
make.stationary.ships   Identify and parameterize stationary active
                        ships in a DeponsShips object
make.windfarms          Make wind farm construction scenario
plot,DeponsBlockdyn,missing-method
                        Plot a DeponsBlockdyn object
plot,DeponsDyn,missing-method
                        Plot a DeponsDyn object
plot,DeponsRaster,ANY-method
                        Plot a DeponsRaster object
plot,DeponsShips,missing-method
                        Plot a DeponsShips object
plot,DeponsTrack,missing-method
                        Plot a DeponsTrack object
plot_calib02            Plotting of simulated fine or large-scale
                        metrics against argos data
porpoisebdyn            Simulated porpoise population dynamics
porpoisedyn             Simulated porpoise population dynamics
porpoisetrack           Simulated porpoise track
read.DeponsBlockdyn     Reading simulated population count for blocks
read.DeponsDyn          Reading DEPONS simulation output
read.DeponsDynBatch     Read and merges DEPONS Batchmap and Statistics
                        Files
read.DeponsParam        Read simulation parameters
read.DeponsRaster       Reading DEPONS raster files
read.DeponsShips        Read DEPONS ship files
read.DeponsTrack        Reading DEPONS track files
read.DeponsTrackBatch   Read and Process DEPONS Batchmap and Statistics
                        Files
routes                  Get or define routes in DeponsShips objects
set.ship.type           Convert AIS vessel type identifiers into the
                        ship types recognized by DEPONS
shipdata                Ships on example routes through the Kattegat
ships                   Get or define ships in DeponsShips objects
startday                Get or set start date for simulation
tick.to.time            Convert tick number to time object
time.to.tick            Convert date to tick number
title<-                 Get or set the title of Depons* objects
write,DeponsShips-method
                        Write DEPONS ship files
