3437e04ebc5411ef2daf1aba38ff1159 *DESCRIPTION
d10a07ae5c9a4e4c278821a72dd5d1e5 *NAMESPACE
a4637a38add280f1ba66214c8ef1d075 *R/CimpleG-package.R
a9e783bd54364edf89cd8a3576625f8f *R/CimpleG.R
a24f9257549a021128d985880a6ae6fc *R/about.R
5c9a36a07bb65666c51de60576cdf45c *R/data.R
daf360ec6142f08ff54ff6012c9cb0a3 *R/deconv_pred_obs_plot.R
5b5fe9c5c56b4b30efbef20eb7f188f4 *R/deconv_ranking_plot.R
64991d503fad9d06381d1736389f4000 *R/deconvolution.R
7927c9dd50d85edbb193527b78fbcdc5 *R/fetch_cpg_annot.R
5c10d333c6e3f9c4d7ba352063c360af *R/globals.R
d35091926506d5b728656dc732fac63b *R/helper_functions.R
85493cf75dbcc2dcaf8e0e6160821adf *R/helper_plot_functions.R
153e9cc60bfbf9f8551f7db6f05a125a *R/input_data_check_prep.R
9661807748bfa1c8c000ae083a735aa3 *R/make_deconv_pred_obs_data.R
3dd12df12156ed16c01e46c48fa939d2 *R/mean_imput.R
a1bdd9400c9f2c168ac0bdab64e37663 *R/param_checkup.R
e2912ad6126990d468701d9140d82688 *R/plot.R
c47e943893aff60840c52940f718cdd7 *R/prep_summarizedexp_data.R
a027efe486ead212f8560c751080a23f *R/save_load_helper.R
b7193d893d1baa7fb7e11fbfb513c663 *R/zzz.R
062beedba74c044fb9ab160b4122775e *README.md
76e123f5dcc8dee07678412adc0a2a84 *build/partial.rdb
b007db569ba6c0aa17cf2d2db0267ae1 *build/vignette.rds
1a5c61f89ac86c594da356eb03cbdcbf *data/test_data.rda
65ee5bdf396ffab94ee92b3217900fb0 *data/test_targets.rda
acbc28361b516ad3ee5b59669f8fe2fe *data/train_data.rda
bf5d1bb5338563989b001d6164756058 *data/train_targets.rda
5fb71068852ee4d1adc9bac80066ae28 *inst/WORDLIST
e35665a9944d699b1a5ecd12c7c54879 *inst/doc/generate-signatures.R
02542dc41d3cbf485055ae59723b8731 *inst/doc/generate-signatures.Rmd
6a0093af6308e673aa443eaafd492c50 *inst/doc/generate-signatures.html
01880dd8ad45d3600ccae7f2fbeef218 *inst/doc/save_load_objects.R
7949cb283f6a6fc4101f56094ba98c02 *inst/doc/save_load_objects.Rmd
5143df19176207cba8b1fae9786e4854 *inst/doc/save_load_objects.html
14de8db9ae828b2e036a5668c6c53dcf *man/CimpleG-package.Rd
ae14e78246138ae42964ee39c930e113 *man/CimpleG.Rd
a8f566c6d3bd373a83e4b741298d4fed *man/compute_ax.Rd
783e8d67f0c5ab75deda1a69e40d1e37 *man/compute_diffmeans_sumvar.Rd
360ea001f6f2a8838cc4f6e921e13f41 *man/darken.Rd
f855f9002d7ad656c4fe194d6523db27 *man/deconv_pred_obs_plot.Rd
d39bb024575dd4b2b997ec9949f66c23 *man/deconv_ranking_plot.Rd
51b530fcba70412ed40f804904841489 *man/deconvolution_barplot.Rd
657d5495d984f667d1f8c62c2801405d *man/deconvolution_epidish.Rd
0b0c1f60f161044de59dd7767d01af67 *man/deconvolution_nmf.Rd
43bd0a3f7384efd7c45577ec890998da *man/deconvolution_nnls.Rd
2acf3388e4c96b80db743e21e63e26f5 *man/diffmeans_sumvariance_plot.Rd
aa1120c678e6b4cfe7c0ecd622df6445 *man/dmsv_plot.Rd
c66f261d54b82cc11f474fa0e3ae9870 *man/eval_test_data.Rd
bccc45106986f40e9ec5b7ff770bdb87 *man/get_cpg_annotation.Rd
a76b3e9a18096b8b4d78ca6c220affb2 *man/lighten.Rd
3970558312235aef91f463edca4af490 *man/load_object.Rd
40c68c9ef91dcd324e15c618f34d9bdb *man/make_color_palette.Rd
a1eb9377a8a57f3c50d56f0ed57c7ae2 *man/make_deconv_pred_obs_data.Rd
eed781bbb5279c1d1def230f52be97df *man/make_deconv_ref_matrix.Rd
e03e68f688a998f82afe06f7311bd045 *man/predict.CimpleG.Rd
4a5db59dccaeb672008b1e6d6894178b *man/run_deconvolution.Rd
c670423e32b63a251a1e0f5fad379e3e *man/save_object.Rd
29aa89a77fd63cd119da542c8b44ece8 *man/select_features.Rd
f24efd0e66256279afd311e0d37ab789 *man/signature_plot.Rd
84ff7e1d8b8b98c0b914a7542906841d *man/test_data.Rd
e24ae4b327e03a08f2b81430d28a2fab *man/test_targets.Rd
3a529eb3bad52f25a2a59953dec2750f *man/train_data.Rd
4cefdfda20fd5f9a9acdddf5bf258994 *man/train_targets.Rd
5940889d46d272f1396f3919c05b80d6 *tests/spelling.R
79cbda2dddf7d9e1c01cce756d1845b2 *tests/testthat.R
544b4d45f0bcb62e7ff665681d71fa4b *tests/testthat/test-CimpleG.R
b088a410015c4cee7257d4a3c44b6da2 *tests/testthat/test1-CimpleG-decisiontree.R
a2be4f0e96195be87b9074d45c769b31 *tests/testthat/test1-CimpleG-nnet.R
d29cf2044695ff68d92330ddd287cab3 *tests/testthat/test1-CimpleG-rf.R
098d73af80a5e51571faa184ad232fe4 *tests/testthat/test2-CimpleG-elasticnet.R
5de667070b02f4a00da090fd2f6c4fa6 *tests/testthat/test3-CimpleG-xgboost.R
bb989c8332b173936693f0ae519549c0 *tests/testthat/test4-CimpleG-bruteforce.R
00662138691a79596bc7842de657b50d *tests/testthat/test5-CimpleG-parab.R
d41d8cd98f00b204e9800998ecf8427e *tests/testthat/test8-CimpleG-deconvolution.R
abe28a71910903d74a002fd15ad2ca75 *tests/testthat/test8-CimpleG-parallel.R
58cbef4fa9d85b740af6b055b986fa17 *tests/testthat/test8-CimpleG-plots.R
ae05959e372279e6d581650e29ee62d6 *tests/testthat/test8-CimpleG-save_load.R
02542dc41d3cbf485055ae59723b8731 *vignettes/generate-signatures.Rmd
7949cb283f6a6fc4101f56094ba98c02 *vignettes/save_load_objects.Rmd
