# Generated by roxygen2: do not edit by hand

S3method(summary,locus)
export(eqtl_plot)
export(genetrack_ly)
export(genetracks)
export(genetracks_grob)
export(gg_addgenes)
export(gg_genetracks)
export(gg_scatter)
export(line_plot)
export(link_LD)
export(link_eqtl)
export(link_recomb)
export(locus)
export(locus_ggplot)
export(locus_plot)
export(locus_plotly)
export(multi_layout)
export(overlay_plot)
export(quick_peak)
export(sanity_check)
export(scatter_plot)
export(scatter_plotly)
export(set_layers)
export(zoom)
importFrom(AnnotationFilter,
  AnnotationFilterList,
  ExonEndFilter,
  ExonStartFilter,
  GeneIdFilter,
  GeneNameFilter,
  SeqNameFilter,
  TxEndFilter,
  TxStartFilter
)
importFrom(BiocGenerics,
  end,
  start
)
importFrom(DT,
  datatable,
  formatSignif
)
importFrom(GenomeInfoDb,
  "genome<-",
  genome,
  seqlengths,
  seqnames
)
importFrom(GenomicRanges,GRanges)
importFrom(IRanges,IRanges)
importFrom(LDlinkR,
  LDexpress,
  LDmatrix,
  LDproxy
)
importFrom(Rcpp,sourceCpp)
importFrom(cowplot,plot_grid)
importFrom(dplyr,bind_rows)
importFrom(ensembldb,
  ensemblVersion,
  exons,
  genes,
  listColumns,
  organism
)
importFrom(gggrid,grid_panel)
importFrom(ggplot2,
  aes,
  element_blank,
  element_rect,
  element_text,
  geom_hline,
  geom_line,
  geom_point,
  ggplot,
  guide_legend,
  guides,
  labs,
  layer_scales,
  scale_color_manual,
  scale_fill_manual,
  scale_shape_manual,
  scale_y_continuous,
  sec_axis,
  theme,
  theme_classic,
  unit,
  xlab,
  xlim,
  ylim
)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,
  adjustcolor,
  col2rgb,
  dev.off,
  hcl.colors,
  pdf,
  rainbow,
  rgb
)
importFrom(graphics,
  axTicks,
  axis,
  legend,
  lines,
  mtext,
  par,
  plot.new,
  points,
  rect,
  strwidth,
  text
)
importFrom(grid,
  gList,
  gTree,
  gpar,
  polylineGrob,
  rectGrob,
  textGrob,
  viewport,
  xaxisGrob
)
importFrom(gtools,mixedsort)
importFrom(htmltools,
  br,
  tags
)
importFrom(memoise,
  drop_cache,
  memoise
)
importFrom(plotly,
  "%>%",
  add_segments,
  add_text,
  add_trace,
  config,
  event_data,
  layout,
  plot_ly,
  plotlyOutput,
  plotlyProxy,
  plotlyProxyInvoke,
  plotly_build,
  plotly_empty,
  renderPlotly
)
importFrom(rlang,.data)
importFrom(rtracklayer,
  browserSession,
  getTable,
  ucscTableQuery
)
importFrom(shiny,
  HTML,
  actionButton,
  checkboxInput,
  column,
  conditionalPanel,
  debounce,
  downloadButton,
  downloadHandler,
  fluidPage,
  fluidRow,
  h5,
  icon,
  isolate,
  need,
  observe,
  observeEvent,
  outputOptions,
  radioButtons,
  reactive,
  reactiveVal,
  reactiveValues,
  removeNotification,
  renderText,
  renderUI,
  req,
  runApp,
  showNotification,
  splitLayout,
  tabPanel,
  tabsetPanel,
  textInput,
  textOutput,
  uiOutput,
  updateTextInput,
  validate
)
importFrom(shinyFeedback,
  hideFeedback,
  showFeedback,
  useShinyFeedback
)
importFrom(shinyWidgets,
  dropdown,
  pickerInput,
  pickerOptions
)
importFrom(shinycssloaders,withSpinner)
importFrom(stats,
  as.formula,
  complete.cases,
  relevel,
  setNames
)
importFrom(zoo,na.approx)
useDynLib(locuszoomr)
