Last updated on 2026-08-03 14:50:37 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 44.61 | 400.17 | 444.78 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 30.38 | 272.04 | 302.42 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 76.00 | 627.08 | 703.08 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 33.00 | 278.80 | 311.80 | OK | |
| r-devel-windows-x86_64 | 1.0.1 | 46.00 | 335.00 | 381.00 | OK | |
| r-patched-linux-x86_64 | 1.0.1 | 41.42 | 385.95 | 427.37 | OK | |
| r-release-linux-x86_64 | 1.0.1 | 41.24 | 391.30 | 432.54 | OK | |
| r-release-macos-arm64 | 1.0.1 | 9.00 | 80.00 | 89.00 | ERROR | |
| r-release-macos-x86_64 | 1.0.1 | 28.00 | 229.00 | 257.00 | ERROR | |
| r-release-windows-x86_64 | 1.0.1 | 47.00 | 336.00 | 383.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.1 | 10.00 | 81.00 | 91.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.0.1 | 29.00 | 429.00 | 458.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.0.1 | 72.00 | 457.00 | 529.00 | OK |
Version: 1.0.1
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp00NYyP’ ‘~/tmp/scratch/Rtmp0FmzAo’
‘~/tmp/scratch/Rtmp0gsWDB’ ‘~/tmp/scratch/Rtmp0juL3N’
‘~/tmp/scratch/Rtmp0uUhKJ’ ‘~/tmp/scratch/Rtmp1mozuJ’
‘~/tmp/scratch/Rtmp28qxJW’ ‘~/tmp/scratch/Rtmp35Vv5Y’
‘~/tmp/scratch/Rtmp3ywIhl’ ‘~/tmp/scratch/Rtmp4CjjmR’
‘~/tmp/scratch/Rtmp4H2RUZ’ ‘~/tmp/scratch/Rtmp57ECbQ’
‘~/tmp/scratch/Rtmp669vlS’ ‘~/tmp/scratch/Rtmp7Lg0Jl’
‘~/tmp/scratch/Rtmp7QYfjA’ ‘~/tmp/scratch/Rtmp7bLgJz’
‘~/tmp/scratch/Rtmp7mHgHY’ ‘~/tmp/scratch/Rtmp7oq1ht’
‘~/tmp/scratch/Rtmp7paytr’ ‘~/tmp/scratch/Rtmp7sQZzJ’
‘~/tmp/scratch/Rtmp8IzNbl’ ‘~/tmp/scratch/Rtmp8iSDdp’
‘~/tmp/scratch/Rtmp9Wmdsa’ ‘~/tmp/scratch/Rtmp9iaNVw’
‘~/tmp/scratch/Rtmp9nGj4v’ ‘~/tmp/scratch/RtmpA0obad’
‘~/tmp/scratch/RtmpAcHudc’ ‘~/tmp/scratch/RtmpBo28Dy’
‘~/tmp/scratch/RtmpC6vVa3’ ‘~/tmp/scratch/RtmpCFSbIw’
‘~/tmp/scratch/RtmpCFV4U7’ ‘~/tmp/scratch/RtmpCIUvDX’
‘~/tmp/scratch/RtmpCOdops’ ‘~/tmp/scratch/RtmpCoyjL1’
‘~/tmp/scratch/RtmpCs2FLS’ ‘~/tmp/scratch/RtmpCw7nfb’
‘~/tmp/scratch/RtmpD8G2gT’ ‘~/tmp/scratch/RtmpDfNDL0’
‘~/tmp/scratch/RtmpDiCZMB’ ‘~/tmp/scratch/RtmpEHa1l6’
‘~/tmp/scratch/RtmpEUBB9c’ ‘~/tmp/scratch/RtmpErqK0e’
‘~/tmp/scratch/RtmpFMQesq’ ‘~/tmp/scratch/RtmpFPzfcq’
‘~/tmp/scratch/RtmpFdIEOl’ ‘~/tmp/scratch/RtmpGELFfo’
‘~/tmp/scratch/RtmpGwXeQw’ ‘~/tmp/scratch/RtmpHBRfns’
‘~/tmp/scratch/RtmpHVDxaT’ ‘~/tmp/scratch/RtmpHdhEIL’
‘~/tmp/scratch/RtmpIDM0nf’ ‘~/tmp/scratch/RtmpIE2EKN’
‘~/tmp/scratch/RtmpIE85Vs’ ‘~/tmp/scratch/RtmpIHXFdw’
‘~/tmp/scratch/RtmpIUHniG’ ‘~/tmp/scratch/RtmpIaOGMz’
‘~/tmp/scratch/RtmpIjHld9’ ‘~/tmp/scratch/RtmpIzyI2H’
‘~/tmp/scratch/RtmpJ7sZjX’ ‘~/tmp/scratch/RtmpJgQMBQ’
‘~/tmp/scratch/RtmpK5Gwx8’ ‘~/tmp/scratch/RtmpKS63PC’
‘~/tmp/scratch/RtmpKkJbOV’ ‘~/tmp/scratch/RtmpLnGux2’
‘~/tmp/scratch/RtmpLq17QD’ ‘~/tmp/scratch/RtmpLu3hKz’
‘~/tmp/scratch/RtmpM4nczn’ ‘~/tmp/scratch/RtmpMCMXT9’
‘~/tmp/scratch/RtmpMUuNtd’ ‘~/tmp/scratch/RtmpNFjZL5’
‘~/tmp/scratch/RtmpNWtQ4o’ ‘~/tmp/scratch/RtmpO8NJQz’
‘~/tmp/scratch/RtmpOVFkcA’ ‘~/tmp/scratch/RtmpOaOZUJ’
‘~/tmp/scratch/RtmpOtj3vy’ ‘~/tmp/scratch/RtmpOyJQmt’
‘~/tmp/scratch/RtmpPXFTjo’ ‘~/tmp/scratch/RtmpPavilI’
‘~/tmp/scratch/RtmpPimqke’ ‘~/tmp/scratch/RtmpPu2Fee’
‘~/tmp/scratch/RtmpQFS1t7’ ‘~/tmp/scratch/RtmpQTlt38’
‘~/tmp/scratch/RtmpR0MuHs’ ‘~/tmp/scratch/RtmpR1JCGx’
‘~/tmp/scratch/RtmpRSOnJ9’ ‘~/tmp/scratch/RtmpS09fhS’
‘~/tmp/scratch/RtmpSGAjX1’ ‘~/tmp/scratch/RtmpT9WGUa’
‘~/tmp/scratch/RtmpTX2cIj’ ‘~/tmp/scratch/RtmpTmt2cd’
‘~/tmp/scratch/RtmpUCYy7q’ ‘~/tmp/scratch/RtmpVam4Cv’
‘~/tmp/scratch/RtmpVdpdqJ’ ‘~/tmp/scratch/RtmpWpmUy1’
‘~/tmp/scratch/RtmpX3uhRt’ ‘~/tmp/scratch/RtmpXYHmuu’
‘~/tmp/scratch/RtmpY09lDJ’ ‘~/tmp/scratch/RtmpY4UhAT’
‘~/tmp/scratch/RtmpY7narK’ ‘~/tmp/scratch/RtmpZGDXMC’
‘~/tmp/scratch/RtmpZW2IQP’ ‘~/tmp/scratch/RtmpZbmqyu’
‘~/tmp/scratch/Rtmpa4jHuQ’ ‘~/tmp/scratch/RtmpaCsH7P’
‘~/tmp/scratch/RtmpaMR41l’ ‘~/tmp/scratch/RtmpaWylIt’
‘~/tmp/scratch/Rtmpabe5iF’ ‘~/tmp/scratch/RtmpaltxcQ’
‘~/tmp/scratch/Rtmpao0H2K’ ‘~/tmp/scratch/RtmpaoUs6k’
‘~/tmp/scratch/RtmpbLtHn0’ ‘~/tmp/scratch/RtmpbMX4em’
‘~/tmp/scratch/RtmpbW8uUG’ ‘~/tmp/scratch/RtmpbwQMzu’
‘~/tmp/scratch/RtmpcoM5ic’ ‘~/tmp/scratch/RtmpcrlbLc’
‘~/tmp/scratch/RtmpdNDB34’ ‘~/tmp/scratch/RtmpdkjIkS’
‘~/tmp/scratch/RtmpdtGgLG’ ‘~/tmp/scratch/RtmpeXUoiZ’
‘~/tmp/scratch/RtmpfCcQKz’ ‘~/tmp/scratch/RtmpfKmT07’
‘~/tmp/scratch/Rtmpfm4idN’ ‘~/tmp/scratch/RtmpfqzoDt’
‘~/tmp/scratch/Rtmpfzo4OT’ ‘~/tmp/scratch/RtmpghebFL’
‘~/tmp/scratch/RtmpgyqWW0’ ‘~/tmp/scratch/RtmphRP7nW’
‘~/tmp/scratch/RtmphcfmHd’ ‘~/tmp/scratch/Rtmphdpks4’
‘~/tmp/scratch/RtmphlPTVI’ ‘~/tmp/scratch/RtmphzLsWt’
‘~/tmp/scratch/Rtmpi03wCg’ ‘~/tmp/scratch/RtmpiCjOz0’
‘~/tmp/scratch/RtmpiJMRdH’ ‘~/tmp/scratch/RtmpiZmbbj’
‘~/tmp/scratch/RtmpixKcsx’ ‘~/tmp/scratch/Rtmpj1vMjO’
‘~/tmp/scratch/Rtmpjc284W’ ‘~/tmp/scratch/RtmpkBnhyn’
‘~/tmp/scratch/RtmpkIpQ4y’ ‘~/tmp/scratch/RtmpkM8seu’
‘~/tmp/scratch/RtmpkdOolQ’ ‘~/tmp/scratch/Rtmpl5w8B9’
‘~/tmp/scratch/RtmplQVUYp’ ‘~/tmp/scratch/RtmplhVkWT’
‘~/tmp/scratch/RtmpnSlE5f’ ‘~/tmp/scratch/RtmpnpLRml’
‘~/tmp/scratch/RtmpnwMoVt’ ‘~/tmp/scratch/Rtmpo5HChC’
‘~/tmp/scratch/Rtmppd3rWx’ ‘~/tmp/scratch/RtmpqBSW7H’
‘~/tmp/scratch/RtmpqCspPg’ ‘~/tmp/scratch/RtmpqILQHy’
‘~/tmp/scratch/RtmpqIzwNo’ ‘~/tmp/scratch/RtmprcNFqR’
‘~/tmp/scratch/RtmpryVXjC’ ‘~/tmp/scratch/Rtmps4KXCn’
‘~/tmp/scratch/Rtmps52zg1’ ‘~/tmp/scratch/RtmpsH1TGU’
‘~/tmp/scratch/RtmpsTFlqv’ ‘~/tmp/scratch/RtmpsZU6a2’
‘~/tmp/scratch/RtmpsqjCWh’ ‘~/tmp/scratch/Rtmpsswfru’
‘~/tmp/scratch/RtmptZx3UZ’ ‘~/tmp/scratch/Rtmpv7Lajc’
‘~/tmp/scratch/Rtmpv7hWg9’ ‘~/tmp/scratch/Rtmpv9j39z’
‘~/tmp/scratch/RtmpvP5xvg’ ‘~/tmp/scratch/Rtmpw37oYD’
‘~/tmp/scratch/RtmpwV6yEs’ ‘~/tmp/scratch/Rtmpy1lpE0’
‘~/tmp/scratch/Rtmpy9wC1C’ ‘~/tmp/scratch/RtmpyyVnBx’
‘~/tmp/scratch/RtmpzpL4Wm’ ‘~/tmp/scratch/ccZmMPqr.s’
‘~/tmp/scratch/ccdfbw4c.s’ ‘~/tmp/scratch/xvfb-run.0161pR’
‘~/tmp/scratch/xvfb-run.11JBIN’ ‘~/tmp/scratch/xvfb-run.4ldFRv’
‘~/tmp/scratch/xvfb-run.5Q3Rgt’ ‘~/tmp/scratch/xvfb-run.6OHc5k’
‘~/tmp/scratch/xvfb-run.6OoJ0E’ ‘~/tmp/scratch/xvfb-run.6UnnN2’
‘~/tmp/scratch/xvfb-run.6wgzU6’ ‘~/tmp/scratch/xvfb-run.AuDZa0’
‘~/tmp/scratch/xvfb-run.B4HzlC’ ‘~/tmp/scratch/xvfb-run.CFnYae’
‘~/tmp/scratch/xvfb-run.CO5Fm4’ ‘~/tmp/scratch/xvfb-run.CZu9xc’
‘~/tmp/scratch/xvfb-run.CuwIIj’ ‘~/tmp/scratch/xvfb-run.Cv8JMD’
‘~/tmp/scratch/xvfb-run.DdVOi6’ ‘~/tmp/scratch/xvfb-run.DntMur’
‘~/tmp/scratch/xvfb-run.EdigNL’ ‘~/tmp/scratch/xvfb-run.GVZrbX’
‘~/tmp/scratch/xvfb-run.HKI5Tf’ ‘~/tmp/scratch/xvfb-run.I6eTBF’
‘~/tmp/scratch/xvfb-run.JTPGU5’ ‘~/tmp/scratch/xvfb-run.KGWdaU’
‘~/tmp/scratch/xvfb-run.LDoRpl’ ‘~/tmp/scratch/xvfb-run.LKEpFD’
‘~/tmp/scratch/xvfb-run.OBd2Fs’ ‘~/tmp/scratch/xvfb-run.OTYByw’
‘~/tmp/scratch/xvfb-run.OtHxa4’ ‘~/tmp/scratch/xvfb-run.Ow8xqr’
‘~/tmp/scratch/xvfb-run.PCSNSj’ ‘~/tmp/scratch/xvfb-run.Q28vrw’
‘~/tmp/scratch/xvfb-run.QPljzG’ ‘~/tmp/scratch/xvfb-run.QcYrL0’
‘~/tmp/scratch/xvfb-run.QkBNsP’ ‘~/tmp/scratch/xvfb-run.R1Qqla’
‘~/tmp/scratch/xvfb-run.S8iLNi’ ‘~/tmp/scratch/xvfb-run.SnMP59’
‘~/tmp/scratch/xvfb-run.Sps5xg’ ‘~/tmp/scratch/xvfb-run.T34OBZ’
‘~/tmp/scratch/xvfb-run.THzBt9’ ‘~/tmp/scratch/xvfb-run.TpzFpP’
‘~/tmp/scratch/xvfb-run.VS8pW9’ ‘~/tmp/scratch/xvfb-run.X81Al3’
‘~/tmp/scratch/xvfb-run.XVeIeg’ ‘~/tmp/scratch/xvfb-run.YdJBsv’
‘~/tmp/scratch/xvfb-run.YpPz3o’ ‘~/tmp/scratch/xvfb-run.ZAxKWZ’
‘~/tmp/scratch/xvfb-run.ZmgJ0Q’ ‘~/tmp/scratch/xvfb-run.ZmofPI’
‘~/tmp/scratch/xvfb-run.bCuUBj’ ‘~/tmp/scratch/xvfb-run.c74RQo’
‘~/tmp/scratch/xvfb-run.dJcyml’ ‘~/tmp/scratch/xvfb-run.fzBtnp’
‘~/tmp/scratch/xvfb-run.g7UDKS’ ‘~/tmp/scratch/xvfb-run.gFRbNK’
‘~/tmp/scratch/xvfb-run.hSc82j’ ‘~/tmp/scratch/xvfb-run.ix3qep’
‘~/tmp/scratch/xvfb-run.jUptnP’ ‘~/tmp/scratch/xvfb-run.jnHLRc’
‘~/tmp/scratch/xvfb-run.jvl98G’ ‘~/tmp/scratch/xvfb-run.k60o5R’
‘~/tmp/scratch/xvfb-run.kdiK30’ ‘~/tmp/scratch/xvfb-run.kq9rwu’
‘~/tmp/scratch/xvfb-run.l329S1’ ‘~/tmp/scratch/xvfb-run.nrx4Ca’
‘~/tmp/scratch/xvfb-run.o46eOh’ ‘~/tmp/scratch/xvfb-run.oJ5Xx6’
‘~/tmp/scratch/xvfb-run.p5BExV’ ‘~/tmp/scratch/xvfb-run.pR1zyx’
‘~/tmp/scratch/xvfb-run.qPyjmf’ ‘~/tmp/scratch/xvfb-run.qRuwtM’
‘~/tmp/scratch/xvfb-run.sUlQ0E’ ‘~/tmp/scratch/xvfb-run.tUhJvV’
‘~/tmp/scratch/xvfb-run.tbFy0A’ ‘~/tmp/scratch/xvfb-run.trdX2X’
‘~/tmp/scratch/xvfb-run.v9l5ym’ ‘~/tmp/scratch/xvfb-run.vKxR2m’
‘~/tmp/scratch/xvfb-run.vtSwOE’ ‘~/tmp/scratch/xvfb-run.wi7zci’
‘~/tmp/scratch/xvfb-run.y9Empo’ ‘~/tmp/scratch/xvfb-run.yB8GWw’
‘~/tmp/scratch/xvfb-run.zCRiwK’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown
Quitting from boldconnectr_workflow.Rmd:121-132 [align-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'muscle'
---
Backtrace:
▆
1. ├─BOLDconnectR::bold.analyze.align(...)
2. │ └─BOLDconnectR:::gen.msa.res(...)
3. └─base::loadNamespace(x)
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics:
there is no package called 'muscle'
--- failed re-building ‘boldconnectr_workflow.Rmd’
SUMMARY: processing the following file failed:
‘boldconnectr_workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown
2026-08-03 21:09:00.553 R[3289:495422] XType: Using static font registry.
Quitting from boldconnectr_workflow.Rmd:121-132 [align-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'muscle'
---
Backtrace:
▆
1. ├─BOLDconnectR::bold.analyze.align(...)
2. │ └─BOLDconnectR:::gen.msa.res(...)
3. └─base::loadNamespace(x)
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics:
there is no package called 'muscle'
--- failed re-building ‘boldconnectr_workflow.Rmd’
SUMMARY: processing the following file failed:
‘boldconnectr_workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64