CRAN Package Check Results for Package BOLDconnectR

Last updated on 2026-08-04 02:50:27 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 44.61 400.17 444.78 OK
r-devel-linux-x86_64-debian-gcc 1.0.1 34.51 274.45 308.96 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.1 76.00 627.08 703.08 OK
r-devel-linux-x86_64-fedora-gcc 1.0.1 33.00 278.80 311.80 OK
r-devel-windows-x86_64 1.0.1 46.00 335.00 381.00 OK
r-patched-linux-x86_64 1.0.1 41.42 385.95 427.37 OK
r-release-linux-x86_64 1.0.1 41.24 391.30 432.54 OK
r-release-macos-arm64 1.0.1 10.00 76.00 86.00 ERROR
r-release-macos-x86_64 1.0.1 28.00 243.00 271.00 ERROR
r-release-windows-x86_64 1.0.1 46.00 340.00 386.00 OK
r-oldrel-macos-arm64 1.0.1 9.00 82.00 91.00 ERROR
r-oldrel-macos-x86_64 1.0.1 28.00 379.00 407.00 ERROR
r-oldrel-windows-x86_64 1.0.1 62.00 465.00 527.00 OK

Check Details

Version: 1.0.1
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp03TXFj’ ‘~/tmp/scratch/Rtmp1QuEdY’ ‘~/tmp/scratch/Rtmp2AZMNI’ ‘~/tmp/scratch/Rtmp2TneBa’ ‘~/tmp/scratch/Rtmp2VKuNm’ ‘~/tmp/scratch/Rtmp38iIOU’ ‘~/tmp/scratch/Rtmp3WyNqD’ ‘~/tmp/scratch/Rtmp3oWWTK’ ‘~/tmp/scratch/Rtmp3yb1XF’ ‘~/tmp/scratch/Rtmp4CL5iO’ ‘~/tmp/scratch/Rtmp4Nu5jM’ ‘~/tmp/scratch/Rtmp4ntDPg’ ‘~/tmp/scratch/Rtmp4saQIH’ ‘~/tmp/scratch/Rtmp4ulY2Z’ ‘~/tmp/scratch/Rtmp55hlqI’ ‘~/tmp/scratch/Rtmp5EA3Jb’ ‘~/tmp/scratch/Rtmp6lKWga’ ‘~/tmp/scratch/Rtmp7EkKlT’ ‘~/tmp/scratch/Rtmp7MSGd5’ ‘~/tmp/scratch/Rtmp8AC5P4’ ‘~/tmp/scratch/Rtmp8Ev906’ ‘~/tmp/scratch/Rtmp8RYZzF’ ‘~/tmp/scratch/Rtmp8iFmqz’ ‘~/tmp/scratch/Rtmp8lx2wn’ ‘~/tmp/scratch/Rtmp8xV2YS’ ‘~/tmp/scratch/Rtmp9cJrIR’ ‘~/tmp/scratch/RtmpAE22Sl’ ‘~/tmp/scratch/RtmpAjMpoB’ ‘~/tmp/scratch/RtmpAz03wm’ ‘~/tmp/scratch/RtmpBZ9t7B’ ‘~/tmp/scratch/RtmpEFrNGO’ ‘~/tmp/scratch/RtmpEz0Tvb’ ‘~/tmp/scratch/RtmpFsLxFz’ ‘~/tmp/scratch/RtmpH2Kjjv’ ‘~/tmp/scratch/RtmpHLunG0’ ‘~/tmp/scratch/RtmpI1fFy2’ ‘~/tmp/scratch/RtmpI7eEpv’ ‘~/tmp/scratch/RtmpIJKaQx’ ‘~/tmp/scratch/RtmpItrPaT’ ‘~/tmp/scratch/RtmpJSVIMC’ ‘~/tmp/scratch/RtmpK3cpPT’ ‘~/tmp/scratch/RtmpKer2u8’ ‘~/tmp/scratch/RtmpKett89’ ‘~/tmp/scratch/RtmpKwWIYk’ ‘~/tmp/scratch/RtmpLFGhQ6’ ‘~/tmp/scratch/RtmpLcEdiu’ ‘~/tmp/scratch/RtmpLgeA3x’ ‘~/tmp/scratch/RtmpMK0ckQ’ ‘~/tmp/scratch/RtmpMe0Q6I’ ‘~/tmp/scratch/RtmpMoxp0p’ ‘~/tmp/scratch/RtmpMwXRQK’ ‘~/tmp/scratch/RtmpNwXFal’ ‘~/tmp/scratch/RtmpO9dvN6’ ‘~/tmp/scratch/RtmpOb5Dlx’ ‘~/tmp/scratch/RtmpOcrRjj’ ‘~/tmp/scratch/RtmpQAyuzs’ ‘~/tmp/scratch/RtmpQOWvSh’ ‘~/tmp/scratch/RtmpR1hXNN’ ‘~/tmp/scratch/RtmpR6FZIu’ ‘~/tmp/scratch/RtmpRKQzEX’ ‘~/tmp/scratch/RtmpRedprl’ ‘~/tmp/scratch/RtmpRzJTz0’ ‘~/tmp/scratch/RtmpSG9R6v’ ‘~/tmp/scratch/RtmpSMzfWy’ ‘~/tmp/scratch/RtmpSNTGH0’ ‘~/tmp/scratch/RtmpSSEK32’ ‘~/tmp/scratch/RtmpT0H4VN’ ‘~/tmp/scratch/RtmpTFWhxU’ ‘~/tmp/scratch/RtmpTiWFyF’ ‘~/tmp/scratch/RtmpTjjGSa’ ‘~/tmp/scratch/RtmpTzLLxa’ ‘~/tmp/scratch/RtmpU3nBqA’ ‘~/tmp/scratch/RtmpUGya8e’ ‘~/tmp/scratch/RtmpUTrwpb’ ‘~/tmp/scratch/RtmpUmeElL’ ‘~/tmp/scratch/RtmpV2t1sb’ ‘~/tmp/scratch/RtmpV7bdRP’ ‘~/tmp/scratch/RtmpVMiIcK’ ‘~/tmp/scratch/RtmpVR7IQQ’ ‘~/tmp/scratch/RtmpVU4yuU’ ‘~/tmp/scratch/RtmpVsLmNG’ ‘~/tmp/scratch/RtmpWQ5JQ1’ ‘~/tmp/scratch/RtmpWXYaW7’ ‘~/tmp/scratch/RtmpWmYdGq’ ‘~/tmp/scratch/RtmpWyBZ6s’ ‘~/tmp/scratch/RtmpX6vWIi’ ‘~/tmp/scratch/RtmpXYTr8u’ ‘~/tmp/scratch/RtmpYHBPwY’ ‘~/tmp/scratch/RtmpYLE5R5’ ‘~/tmp/scratch/RtmpYMrRyf’ ‘~/tmp/scratch/RtmpYfZGuA’ ‘~/tmp/scratch/RtmpYoi16m’ ‘~/tmp/scratch/RtmpZJ28Pa’ ‘~/tmp/scratch/RtmpZYFXcz’ ‘~/tmp/scratch/RtmpZoBPQV’ ‘~/tmp/scratch/RtmpZzoASl’ ‘~/tmp/scratch/RtmpaNaBub’ ‘~/tmp/scratch/RtmpaSrEef’ ‘~/tmp/scratch/RtmpaUf4Vk’ ‘~/tmp/scratch/Rtmpac4Va6’ ‘~/tmp/scratch/Rtmpahinsq’ ‘~/tmp/scratch/RtmpavHEa2’ ‘~/tmp/scratch/Rtmpba1TkG’ ‘~/tmp/scratch/RtmpcE8L2a’ ‘~/tmp/scratch/RtmpcXaZyS’ ‘~/tmp/scratch/RtmpcdAZwB’ ‘~/tmp/scratch/Rtmpd0eZDb’ ‘~/tmp/scratch/Rtmpe5KT5F’ ‘~/tmp/scratch/Rtmpe6vg1P’ ‘~/tmp/scratch/RtmpeGzfiM’ ‘~/tmp/scratch/RtmpeOwjPI’ ‘~/tmp/scratch/RtmpeaEE2S’ ‘~/tmp/scratch/Rtmpef2Rof’ ‘~/tmp/scratch/RtmpfKIc5f’ ‘~/tmp/scratch/RtmpfLHUqk’ ‘~/tmp/scratch/RtmpfyAng0’ ‘~/tmp/scratch/Rtmpg2fy6E’ ‘~/tmp/scratch/RtmpgMmqIV’ ‘~/tmp/scratch/RtmpgglhvT’ ‘~/tmp/scratch/RtmpgjLBLE’ ‘~/tmp/scratch/RtmphEAMnH’ ‘~/tmp/scratch/RtmphFiazo’ ‘~/tmp/scratch/RtmphVoYyQ’ ‘~/tmp/scratch/RtmphcF6R2’ ‘~/tmp/scratch/RtmphlMTsJ’ ‘~/tmp/scratch/RtmphwsoNx’ ‘~/tmp/scratch/Rtmpi50cTg’ ‘~/tmp/scratch/RtmpiAYN9D’ ‘~/tmp/scratch/RtmpibSKDx’ ‘~/tmp/scratch/RtmpikHzhG’ ‘~/tmp/scratch/Rtmpj2Qzut’ ‘~/tmp/scratch/RtmpjfvoEu’ ‘~/tmp/scratch/RtmpkJSOjk’ ‘~/tmp/scratch/Rtmpl4Z7Cx’ ‘~/tmp/scratch/RtmplANkib’ ‘~/tmp/scratch/RtmplBhwM3’ ‘~/tmp/scratch/Rtmplpc3B3’ ‘~/tmp/scratch/Rtmpm45ZtT’ ‘~/tmp/scratch/Rtmpm6IUdv’ ‘~/tmp/scratch/RtmpnB1Ope’ ‘~/tmp/scratch/RtmpnH12TS’ ‘~/tmp/scratch/Rtmpned2GB’ ‘~/tmp/scratch/Rtmpnrw6mU’ ‘~/tmp/scratch/RtmpobGqa3’ ‘~/tmp/scratch/RtmppXkeIv’ ‘~/tmp/scratch/RtmppYQj2a’ ‘~/tmp/scratch/RtmppcmIRP’ ‘~/tmp/scratch/RtmppdqOM6’ ‘~/tmp/scratch/Rtmpq9R8v0’ ‘~/tmp/scratch/RtmpqWTnj0’ ‘~/tmp/scratch/Rtmpqa7Yar’ ‘~/tmp/scratch/RtmpqohJ6Z’ ‘~/tmp/scratch/Rtmpqy61ul’ ‘~/tmp/scratch/Rtmpr3hjnN’ ‘~/tmp/scratch/RtmprvkhLb’ ‘~/tmp/scratch/RtmpsihOpR’ ‘~/tmp/scratch/RtmpsrVu8j’ ‘~/tmp/scratch/RtmptSRO5L’ ‘~/tmp/scratch/RtmptdnX4h’ ‘~/tmp/scratch/RtmpuPfmmt’ ‘~/tmp/scratch/RtmpuVOXCt’ ‘~/tmp/scratch/Rtmpuiwk6t’ ‘~/tmp/scratch/RtmpvJgwit’ ‘~/tmp/scratch/Rtmpvegc6v’ ‘~/tmp/scratch/RtmpvrSTkS’ ‘~/tmp/scratch/Rtmpw3MSS4’ ‘~/tmp/scratch/RtmpxJmLRn’ ‘~/tmp/scratch/Rtmpxhi1NV’ ‘~/tmp/scratch/RtmpxjjzyH’ ‘~/tmp/scratch/Rtmpym1xeA’ ‘~/tmp/scratch/RtmpyqeIeA’ ‘~/tmp/scratch/Rtmpz3MXAp’ ‘~/tmp/scratch/Rtmpz63ZuS’ ‘~/tmp/scratch/RtmpzKMIQx’ ‘~/tmp/scratch/ccdVF6Ks.s’ ‘~/tmp/scratch/xvfb-run.09tnKA’ ‘~/tmp/scratch/xvfb-run.18mOHY’ ‘~/tmp/scratch/xvfb-run.1VdHMO’ ‘~/tmp/scratch/xvfb-run.2SaQKX’ ‘~/tmp/scratch/xvfb-run.33kHjo’ ‘~/tmp/scratch/xvfb-run.3TGzow’ ‘~/tmp/scratch/xvfb-run.3YkmRC’ ‘~/tmp/scratch/xvfb-run.3mAtIW’ ‘~/tmp/scratch/xvfb-run.49FtTq’ ‘~/tmp/scratch/xvfb-run.4OAwrz’ ‘~/tmp/scratch/xvfb-run.5RcMQ9’ ‘~/tmp/scratch/xvfb-run.6Ro8OG’ ‘~/tmp/scratch/xvfb-run.85AcBv’ ‘~/tmp/scratch/xvfb-run.8qArTN’ ‘~/tmp/scratch/xvfb-run.9Vb4MC’ ‘~/tmp/scratch/xvfb-run.9lrQnj’ ‘~/tmp/scratch/xvfb-run.AMkivP’ ‘~/tmp/scratch/xvfb-run.BOxIYo’ ‘~/tmp/scratch/xvfb-run.CHBY3H’ ‘~/tmp/scratch/xvfb-run.ChgbAc’ ‘~/tmp/scratch/xvfb-run.E88WIz’ ‘~/tmp/scratch/xvfb-run.I13SqN’ ‘~/tmp/scratch/xvfb-run.KwRgyS’ ‘~/tmp/scratch/xvfb-run.KwsAQY’ ‘~/tmp/scratch/xvfb-run.Lgto7w’ ‘~/tmp/scratch/xvfb-run.MiMeI5’ ‘~/tmp/scratch/xvfb-run.Mjo2r6’ ‘~/tmp/scratch/xvfb-run.NORnPQ’ ‘~/tmp/scratch/xvfb-run.OYJ8LW’ ‘~/tmp/scratch/xvfb-run.OgXCLL’ ‘~/tmp/scratch/xvfb-run.PKW4eZ’ ‘~/tmp/scratch/xvfb-run.PYJNwj’ ‘~/tmp/scratch/xvfb-run.PdyR9D’ ‘~/tmp/scratch/xvfb-run.QL8l80’ ‘~/tmp/scratch/xvfb-run.QoXgcA’ ‘~/tmp/scratch/xvfb-run.Qx8p4S’ ‘~/tmp/scratch/xvfb-run.RsiErK’ ‘~/tmp/scratch/xvfb-run.TtxZMf’ ‘~/tmp/scratch/xvfb-run.VOAlfx’ ‘~/tmp/scratch/xvfb-run.Vl4HXt’ ‘~/tmp/scratch/xvfb-run.WtvVQp’ ‘~/tmp/scratch/xvfb-run.YbVBwL’ ‘~/tmp/scratch/xvfb-run.YfzD74’ ‘~/tmp/scratch/xvfb-run.Ztjk2Q’ ‘~/tmp/scratch/xvfb-run.btFcqJ’ ‘~/tmp/scratch/xvfb-run.cTuPK2’ ‘~/tmp/scratch/xvfb-run.dNIAyA’ ‘~/tmp/scratch/xvfb-run.eF2ayg’ ‘~/tmp/scratch/xvfb-run.eHVuq2’ ‘~/tmp/scratch/xvfb-run.fNANyq’ ‘~/tmp/scratch/xvfb-run.fSg1Sj’ ‘~/tmp/scratch/xvfb-run.g0xAN9’ ‘~/tmp/scratch/xvfb-run.gMbynU’ ‘~/tmp/scratch/xvfb-run.gZxhR3’ ‘~/tmp/scratch/xvfb-run.h4behY’ ‘~/tmp/scratch/xvfb-run.hyXawV’ ‘~/tmp/scratch/xvfb-run.jeHYFS’ ‘~/tmp/scratch/xvfb-run.nKL2Gu’ ‘~/tmp/scratch/xvfb-run.nSna1q’ ‘~/tmp/scratch/xvfb-run.nnRuC1’ ‘~/tmp/scratch/xvfb-run.notnge’ ‘~/tmp/scratch/xvfb-run.pVxWWO’ ‘~/tmp/scratch/xvfb-run.pd7Q6J’ ‘~/tmp/scratch/xvfb-run.qbstiU’ ‘~/tmp/scratch/xvfb-run.qfd13t’ ‘~/tmp/scratch/xvfb-run.qzBiFp’ ‘~/tmp/scratch/xvfb-run.r88Ot7’ ‘~/tmp/scratch/xvfb-run.sF8yIy’ ‘~/tmp/scratch/xvfb-run.t0Cyd9’ ‘~/tmp/scratch/xvfb-run.u5Mjl6’ ‘~/tmp/scratch/xvfb-run.vXJil6’ ‘~/tmp/scratch/xvfb-run.wNL27I’ ‘~/tmp/scratch/xvfb-run.wP3nc9’ ‘~/tmp/scratch/xvfb-run.wYCa8U’ ‘~/tmp/scratch/xvfb-run.xN0Zsn’ ‘~/tmp/scratch/xvfb-run.y5tPtS’ ‘~/tmp/scratch/xvfb-run.yl4uK5’ ‘~/tmp/scratch/xvfb-run.zO0elv’ ‘~/tmp/scratch/xvfb-run.zOZpLe’ ‘~/tmp/scratch/xvfb-run.zb3Y58’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown Quitting from boldconnectr_workflow.Rmd:121-132 [align-data] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'muscle' --- Backtrace: ▆ 1. ├─BOLDconnectR::bold.analyze.align(...) 2. │ └─BOLDconnectR:::gen.msa.res(...) 3. └─base::loadNamespace(x) 4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 5. └─base (local) withOneRestart(expr, restarts[[1L]]) 6. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics: there is no package called 'muscle' --- failed re-building ‘boldconnectr_workflow.Rmd’ SUMMARY: processing the following file failed: ‘boldconnectr_workflow.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown 2026-08-04 11:22:06.642 R[1107:495962] XType: Using static font registry. Quitting from boldconnectr_workflow.Rmd:121-132 [align-data] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'muscle' --- Backtrace: ▆ 1. ├─BOLDconnectR::bold.analyze.align(...) 2. │ └─BOLDconnectR:::gen.msa.res(...) 3. └─base::loadNamespace(x) 4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 5. └─base (local) withOneRestart(expr, restarts[[1L]]) 6. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics: there is no package called 'muscle' --- failed re-building ‘boldconnectr_workflow.Rmd’ SUMMARY: processing the following file failed: ‘boldconnectr_workflow.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-macos-arm64