Last updated on 2026-08-04 02:50:27 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 44.61 | 400.17 | 444.78 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 34.51 | 274.45 | 308.96 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 76.00 | 627.08 | 703.08 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 33.00 | 278.80 | 311.80 | OK | |
| r-devel-windows-x86_64 | 1.0.1 | 46.00 | 335.00 | 381.00 | OK | |
| r-patched-linux-x86_64 | 1.0.1 | 41.42 | 385.95 | 427.37 | OK | |
| r-release-linux-x86_64 | 1.0.1 | 41.24 | 391.30 | 432.54 | OK | |
| r-release-macos-arm64 | 1.0.1 | 10.00 | 76.00 | 86.00 | ERROR | |
| r-release-macos-x86_64 | 1.0.1 | 28.00 | 243.00 | 271.00 | ERROR | |
| r-release-windows-x86_64 | 1.0.1 | 46.00 | 340.00 | 386.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.1 | 9.00 | 82.00 | 91.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.0.1 | 28.00 | 379.00 | 407.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.0.1 | 62.00 | 465.00 | 527.00 | OK |
Version: 1.0.1
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp03TXFj’ ‘~/tmp/scratch/Rtmp1QuEdY’
‘~/tmp/scratch/Rtmp2AZMNI’ ‘~/tmp/scratch/Rtmp2TneBa’
‘~/tmp/scratch/Rtmp2VKuNm’ ‘~/tmp/scratch/Rtmp38iIOU’
‘~/tmp/scratch/Rtmp3WyNqD’ ‘~/tmp/scratch/Rtmp3oWWTK’
‘~/tmp/scratch/Rtmp3yb1XF’ ‘~/tmp/scratch/Rtmp4CL5iO’
‘~/tmp/scratch/Rtmp4Nu5jM’ ‘~/tmp/scratch/Rtmp4ntDPg’
‘~/tmp/scratch/Rtmp4saQIH’ ‘~/tmp/scratch/Rtmp4ulY2Z’
‘~/tmp/scratch/Rtmp55hlqI’ ‘~/tmp/scratch/Rtmp5EA3Jb’
‘~/tmp/scratch/Rtmp6lKWga’ ‘~/tmp/scratch/Rtmp7EkKlT’
‘~/tmp/scratch/Rtmp7MSGd5’ ‘~/tmp/scratch/Rtmp8AC5P4’
‘~/tmp/scratch/Rtmp8Ev906’ ‘~/tmp/scratch/Rtmp8RYZzF’
‘~/tmp/scratch/Rtmp8iFmqz’ ‘~/tmp/scratch/Rtmp8lx2wn’
‘~/tmp/scratch/Rtmp8xV2YS’ ‘~/tmp/scratch/Rtmp9cJrIR’
‘~/tmp/scratch/RtmpAE22Sl’ ‘~/tmp/scratch/RtmpAjMpoB’
‘~/tmp/scratch/RtmpAz03wm’ ‘~/tmp/scratch/RtmpBZ9t7B’
‘~/tmp/scratch/RtmpEFrNGO’ ‘~/tmp/scratch/RtmpEz0Tvb’
‘~/tmp/scratch/RtmpFsLxFz’ ‘~/tmp/scratch/RtmpH2Kjjv’
‘~/tmp/scratch/RtmpHLunG0’ ‘~/tmp/scratch/RtmpI1fFy2’
‘~/tmp/scratch/RtmpI7eEpv’ ‘~/tmp/scratch/RtmpIJKaQx’
‘~/tmp/scratch/RtmpItrPaT’ ‘~/tmp/scratch/RtmpJSVIMC’
‘~/tmp/scratch/RtmpK3cpPT’ ‘~/tmp/scratch/RtmpKer2u8’
‘~/tmp/scratch/RtmpKett89’ ‘~/tmp/scratch/RtmpKwWIYk’
‘~/tmp/scratch/RtmpLFGhQ6’ ‘~/tmp/scratch/RtmpLcEdiu’
‘~/tmp/scratch/RtmpLgeA3x’ ‘~/tmp/scratch/RtmpMK0ckQ’
‘~/tmp/scratch/RtmpMe0Q6I’ ‘~/tmp/scratch/RtmpMoxp0p’
‘~/tmp/scratch/RtmpMwXRQK’ ‘~/tmp/scratch/RtmpNwXFal’
‘~/tmp/scratch/RtmpO9dvN6’ ‘~/tmp/scratch/RtmpOb5Dlx’
‘~/tmp/scratch/RtmpOcrRjj’ ‘~/tmp/scratch/RtmpQAyuzs’
‘~/tmp/scratch/RtmpQOWvSh’ ‘~/tmp/scratch/RtmpR1hXNN’
‘~/tmp/scratch/RtmpR6FZIu’ ‘~/tmp/scratch/RtmpRKQzEX’
‘~/tmp/scratch/RtmpRedprl’ ‘~/tmp/scratch/RtmpRzJTz0’
‘~/tmp/scratch/RtmpSG9R6v’ ‘~/tmp/scratch/RtmpSMzfWy’
‘~/tmp/scratch/RtmpSNTGH0’ ‘~/tmp/scratch/RtmpSSEK32’
‘~/tmp/scratch/RtmpT0H4VN’ ‘~/tmp/scratch/RtmpTFWhxU’
‘~/tmp/scratch/RtmpTiWFyF’ ‘~/tmp/scratch/RtmpTjjGSa’
‘~/tmp/scratch/RtmpTzLLxa’ ‘~/tmp/scratch/RtmpU3nBqA’
‘~/tmp/scratch/RtmpUGya8e’ ‘~/tmp/scratch/RtmpUTrwpb’
‘~/tmp/scratch/RtmpUmeElL’ ‘~/tmp/scratch/RtmpV2t1sb’
‘~/tmp/scratch/RtmpV7bdRP’ ‘~/tmp/scratch/RtmpVMiIcK’
‘~/tmp/scratch/RtmpVR7IQQ’ ‘~/tmp/scratch/RtmpVU4yuU’
‘~/tmp/scratch/RtmpVsLmNG’ ‘~/tmp/scratch/RtmpWQ5JQ1’
‘~/tmp/scratch/RtmpWXYaW7’ ‘~/tmp/scratch/RtmpWmYdGq’
‘~/tmp/scratch/RtmpWyBZ6s’ ‘~/tmp/scratch/RtmpX6vWIi’
‘~/tmp/scratch/RtmpXYTr8u’ ‘~/tmp/scratch/RtmpYHBPwY’
‘~/tmp/scratch/RtmpYLE5R5’ ‘~/tmp/scratch/RtmpYMrRyf’
‘~/tmp/scratch/RtmpYfZGuA’ ‘~/tmp/scratch/RtmpYoi16m’
‘~/tmp/scratch/RtmpZJ28Pa’ ‘~/tmp/scratch/RtmpZYFXcz’
‘~/tmp/scratch/RtmpZoBPQV’ ‘~/tmp/scratch/RtmpZzoASl’
‘~/tmp/scratch/RtmpaNaBub’ ‘~/tmp/scratch/RtmpaSrEef’
‘~/tmp/scratch/RtmpaUf4Vk’ ‘~/tmp/scratch/Rtmpac4Va6’
‘~/tmp/scratch/Rtmpahinsq’ ‘~/tmp/scratch/RtmpavHEa2’
‘~/tmp/scratch/Rtmpba1TkG’ ‘~/tmp/scratch/RtmpcE8L2a’
‘~/tmp/scratch/RtmpcXaZyS’ ‘~/tmp/scratch/RtmpcdAZwB’
‘~/tmp/scratch/Rtmpd0eZDb’ ‘~/tmp/scratch/Rtmpe5KT5F’
‘~/tmp/scratch/Rtmpe6vg1P’ ‘~/tmp/scratch/RtmpeGzfiM’
‘~/tmp/scratch/RtmpeOwjPI’ ‘~/tmp/scratch/RtmpeaEE2S’
‘~/tmp/scratch/Rtmpef2Rof’ ‘~/tmp/scratch/RtmpfKIc5f’
‘~/tmp/scratch/RtmpfLHUqk’ ‘~/tmp/scratch/RtmpfyAng0’
‘~/tmp/scratch/Rtmpg2fy6E’ ‘~/tmp/scratch/RtmpgMmqIV’
‘~/tmp/scratch/RtmpgglhvT’ ‘~/tmp/scratch/RtmpgjLBLE’
‘~/tmp/scratch/RtmphEAMnH’ ‘~/tmp/scratch/RtmphFiazo’
‘~/tmp/scratch/RtmphVoYyQ’ ‘~/tmp/scratch/RtmphcF6R2’
‘~/tmp/scratch/RtmphlMTsJ’ ‘~/tmp/scratch/RtmphwsoNx’
‘~/tmp/scratch/Rtmpi50cTg’ ‘~/tmp/scratch/RtmpiAYN9D’
‘~/tmp/scratch/RtmpibSKDx’ ‘~/tmp/scratch/RtmpikHzhG’
‘~/tmp/scratch/Rtmpj2Qzut’ ‘~/tmp/scratch/RtmpjfvoEu’
‘~/tmp/scratch/RtmpkJSOjk’ ‘~/tmp/scratch/Rtmpl4Z7Cx’
‘~/tmp/scratch/RtmplANkib’ ‘~/tmp/scratch/RtmplBhwM3’
‘~/tmp/scratch/Rtmplpc3B3’ ‘~/tmp/scratch/Rtmpm45ZtT’
‘~/tmp/scratch/Rtmpm6IUdv’ ‘~/tmp/scratch/RtmpnB1Ope’
‘~/tmp/scratch/RtmpnH12TS’ ‘~/tmp/scratch/Rtmpned2GB’
‘~/tmp/scratch/Rtmpnrw6mU’ ‘~/tmp/scratch/RtmpobGqa3’
‘~/tmp/scratch/RtmppXkeIv’ ‘~/tmp/scratch/RtmppYQj2a’
‘~/tmp/scratch/RtmppcmIRP’ ‘~/tmp/scratch/RtmppdqOM6’
‘~/tmp/scratch/Rtmpq9R8v0’ ‘~/tmp/scratch/RtmpqWTnj0’
‘~/tmp/scratch/Rtmpqa7Yar’ ‘~/tmp/scratch/RtmpqohJ6Z’
‘~/tmp/scratch/Rtmpqy61ul’ ‘~/tmp/scratch/Rtmpr3hjnN’
‘~/tmp/scratch/RtmprvkhLb’ ‘~/tmp/scratch/RtmpsihOpR’
‘~/tmp/scratch/RtmpsrVu8j’ ‘~/tmp/scratch/RtmptSRO5L’
‘~/tmp/scratch/RtmptdnX4h’ ‘~/tmp/scratch/RtmpuPfmmt’
‘~/tmp/scratch/RtmpuVOXCt’ ‘~/tmp/scratch/Rtmpuiwk6t’
‘~/tmp/scratch/RtmpvJgwit’ ‘~/tmp/scratch/Rtmpvegc6v’
‘~/tmp/scratch/RtmpvrSTkS’ ‘~/tmp/scratch/Rtmpw3MSS4’
‘~/tmp/scratch/RtmpxJmLRn’ ‘~/tmp/scratch/Rtmpxhi1NV’
‘~/tmp/scratch/RtmpxjjzyH’ ‘~/tmp/scratch/Rtmpym1xeA’
‘~/tmp/scratch/RtmpyqeIeA’ ‘~/tmp/scratch/Rtmpz3MXAp’
‘~/tmp/scratch/Rtmpz63ZuS’ ‘~/tmp/scratch/RtmpzKMIQx’
‘~/tmp/scratch/ccdVF6Ks.s’ ‘~/tmp/scratch/xvfb-run.09tnKA’
‘~/tmp/scratch/xvfb-run.18mOHY’ ‘~/tmp/scratch/xvfb-run.1VdHMO’
‘~/tmp/scratch/xvfb-run.2SaQKX’ ‘~/tmp/scratch/xvfb-run.33kHjo’
‘~/tmp/scratch/xvfb-run.3TGzow’ ‘~/tmp/scratch/xvfb-run.3YkmRC’
‘~/tmp/scratch/xvfb-run.3mAtIW’ ‘~/tmp/scratch/xvfb-run.49FtTq’
‘~/tmp/scratch/xvfb-run.4OAwrz’ ‘~/tmp/scratch/xvfb-run.5RcMQ9’
‘~/tmp/scratch/xvfb-run.6Ro8OG’ ‘~/tmp/scratch/xvfb-run.85AcBv’
‘~/tmp/scratch/xvfb-run.8qArTN’ ‘~/tmp/scratch/xvfb-run.9Vb4MC’
‘~/tmp/scratch/xvfb-run.9lrQnj’ ‘~/tmp/scratch/xvfb-run.AMkivP’
‘~/tmp/scratch/xvfb-run.BOxIYo’ ‘~/tmp/scratch/xvfb-run.CHBY3H’
‘~/tmp/scratch/xvfb-run.ChgbAc’ ‘~/tmp/scratch/xvfb-run.E88WIz’
‘~/tmp/scratch/xvfb-run.I13SqN’ ‘~/tmp/scratch/xvfb-run.KwRgyS’
‘~/tmp/scratch/xvfb-run.KwsAQY’ ‘~/tmp/scratch/xvfb-run.Lgto7w’
‘~/tmp/scratch/xvfb-run.MiMeI5’ ‘~/tmp/scratch/xvfb-run.Mjo2r6’
‘~/tmp/scratch/xvfb-run.NORnPQ’ ‘~/tmp/scratch/xvfb-run.OYJ8LW’
‘~/tmp/scratch/xvfb-run.OgXCLL’ ‘~/tmp/scratch/xvfb-run.PKW4eZ’
‘~/tmp/scratch/xvfb-run.PYJNwj’ ‘~/tmp/scratch/xvfb-run.PdyR9D’
‘~/tmp/scratch/xvfb-run.QL8l80’ ‘~/tmp/scratch/xvfb-run.QoXgcA’
‘~/tmp/scratch/xvfb-run.Qx8p4S’ ‘~/tmp/scratch/xvfb-run.RsiErK’
‘~/tmp/scratch/xvfb-run.TtxZMf’ ‘~/tmp/scratch/xvfb-run.VOAlfx’
‘~/tmp/scratch/xvfb-run.Vl4HXt’ ‘~/tmp/scratch/xvfb-run.WtvVQp’
‘~/tmp/scratch/xvfb-run.YbVBwL’ ‘~/tmp/scratch/xvfb-run.YfzD74’
‘~/tmp/scratch/xvfb-run.Ztjk2Q’ ‘~/tmp/scratch/xvfb-run.btFcqJ’
‘~/tmp/scratch/xvfb-run.cTuPK2’ ‘~/tmp/scratch/xvfb-run.dNIAyA’
‘~/tmp/scratch/xvfb-run.eF2ayg’ ‘~/tmp/scratch/xvfb-run.eHVuq2’
‘~/tmp/scratch/xvfb-run.fNANyq’ ‘~/tmp/scratch/xvfb-run.fSg1Sj’
‘~/tmp/scratch/xvfb-run.g0xAN9’ ‘~/tmp/scratch/xvfb-run.gMbynU’
‘~/tmp/scratch/xvfb-run.gZxhR3’ ‘~/tmp/scratch/xvfb-run.h4behY’
‘~/tmp/scratch/xvfb-run.hyXawV’ ‘~/tmp/scratch/xvfb-run.jeHYFS’
‘~/tmp/scratch/xvfb-run.nKL2Gu’ ‘~/tmp/scratch/xvfb-run.nSna1q’
‘~/tmp/scratch/xvfb-run.nnRuC1’ ‘~/tmp/scratch/xvfb-run.notnge’
‘~/tmp/scratch/xvfb-run.pVxWWO’ ‘~/tmp/scratch/xvfb-run.pd7Q6J’
‘~/tmp/scratch/xvfb-run.qbstiU’ ‘~/tmp/scratch/xvfb-run.qfd13t’
‘~/tmp/scratch/xvfb-run.qzBiFp’ ‘~/tmp/scratch/xvfb-run.r88Ot7’
‘~/tmp/scratch/xvfb-run.sF8yIy’ ‘~/tmp/scratch/xvfb-run.t0Cyd9’
‘~/tmp/scratch/xvfb-run.u5Mjl6’ ‘~/tmp/scratch/xvfb-run.vXJil6’
‘~/tmp/scratch/xvfb-run.wNL27I’ ‘~/tmp/scratch/xvfb-run.wP3nc9’
‘~/tmp/scratch/xvfb-run.wYCa8U’ ‘~/tmp/scratch/xvfb-run.xN0Zsn’
‘~/tmp/scratch/xvfb-run.y5tPtS’ ‘~/tmp/scratch/xvfb-run.yl4uK5’
‘~/tmp/scratch/xvfb-run.zO0elv’ ‘~/tmp/scratch/xvfb-run.zOZpLe’
‘~/tmp/scratch/xvfb-run.zb3Y58’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown
Quitting from boldconnectr_workflow.Rmd:121-132 [align-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'muscle'
---
Backtrace:
▆
1. ├─BOLDconnectR::bold.analyze.align(...)
2. │ └─BOLDconnectR:::gen.msa.res(...)
3. └─base::loadNamespace(x)
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics:
there is no package called 'muscle'
--- failed re-building ‘boldconnectr_workflow.Rmd’
SUMMARY: processing the following file failed:
‘boldconnectr_workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown
2026-08-04 11:22:06.642 R[1107:495962] XType: Using static font registry.
Quitting from boldconnectr_workflow.Rmd:121-132 [align-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'muscle'
---
Backtrace:
▆
1. ├─BOLDconnectR::bold.analyze.align(...)
2. │ └─BOLDconnectR:::gen.msa.res(...)
3. └─base::loadNamespace(x)
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics:
there is no package called 'muscle'
--- failed re-building ‘boldconnectr_workflow.Rmd’
SUMMARY: processing the following file failed:
‘boldconnectr_workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64