Last updated on 2026-08-03 14:50:37 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.3 | 2.47 | 125.87 | 128.34 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.3 | 2.13 | 97.03 | 99.16 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.1.3 | 200.07 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.3 | 94.26 | OK | |||
| r-devel-windows-x86_64 | 0.1.3 | 6.00 | 192.00 | 198.00 | OK | |
| r-patched-linux-x86_64 | 0.1.3 | 3.02 | 91.42 | 94.44 | ERROR | |
| r-release-linux-x86_64 | 0.1.3 | 2.37 | 60.29 | 62.66 | ERROR | |
| r-release-macos-arm64 | 0.1.3 | 1.00 | 82.00 | 83.00 | OK | |
| r-release-macos-x86_64 | 0.1.3 | 2.00 | 223.00 | 225.00 | OK | |
| r-release-windows-x86_64 | 0.1.3 | 5.00 | 202.00 | 207.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.3 | 1.00 | 84.00 | 85.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.3 | 2.00 | 157.00 | 159.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.3 | 8.00 | 195.00 | 203.00 | OK |
Version: 0.1.3
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0rKKeN’ ‘~/tmp/scratch/Rtmp1B0KRH’
‘~/tmp/scratch/Rtmp24saNH’ ‘~/tmp/scratch/Rtmp2kde3k’
‘~/tmp/scratch/Rtmp30q2eT’ ‘~/tmp/scratch/Rtmp3XgITh’
‘~/tmp/scratch/Rtmp4CjjmR’ ‘~/tmp/scratch/Rtmp5UCwlo’
‘~/tmp/scratch/Rtmp5ggvSc’ ‘~/tmp/scratch/Rtmp6BJ5GJ’
‘~/tmp/scratch/Rtmp7WDEZP’ ‘~/tmp/scratch/Rtmp7sQZzJ’
‘~/tmp/scratch/Rtmp8jYTVl’ ‘~/tmp/scratch/Rtmp9Wmdsa’
‘~/tmp/scratch/RtmpAPTPyC’ ‘~/tmp/scratch/RtmpAUtS6x’
‘~/tmp/scratch/RtmpAbAVjO’ ‘~/tmp/scratch/RtmpAcHudc’
‘~/tmp/scratch/RtmpB4iWnm’ ‘~/tmp/scratch/RtmpB6YYix’
‘~/tmp/scratch/RtmpBnbP7X’ ‘~/tmp/scratch/RtmpBsj2El’
‘~/tmp/scratch/RtmpCXn4MX’ ‘~/tmp/scratch/RtmpDAC7CU’
‘~/tmp/scratch/RtmpDpqJ4Q’ ‘~/tmp/scratch/RtmpEKFUnW’
‘~/tmp/scratch/RtmpFMQesq’ ‘~/tmp/scratch/RtmpFdIEOl’
‘~/tmp/scratch/RtmpI0Tris’ ‘~/tmp/scratch/RtmpIBdZKz’
‘~/tmp/scratch/RtmpIUkyID’ ‘~/tmp/scratch/RtmpIZdIC1’
‘~/tmp/scratch/RtmpIuz4qw’ ‘~/tmp/scratch/RtmpKjsMTs’
‘~/tmp/scratch/RtmpKl35L0’ ‘~/tmp/scratch/RtmpLMNuFH’
‘~/tmp/scratch/RtmpLgG2zY’ ‘~/tmp/scratch/RtmpLnYYxk’
‘~/tmp/scratch/RtmpLpDR9c’ ‘~/tmp/scratch/RtmpMlNlPo’
‘~/tmp/scratch/RtmpNquKVE’ ‘~/tmp/scratch/RtmpONDVcW’
‘~/tmp/scratch/RtmpOVzvBl’ ‘~/tmp/scratch/RtmpOcSm11’
‘~/tmp/scratch/RtmpPBYpaT’ ‘~/tmp/scratch/RtmpPMeM5z’
‘~/tmp/scratch/RtmpPOghdg’ ‘~/tmp/scratch/RtmpPXFTjo’
‘~/tmp/scratch/RtmpPd8xqe’ ‘~/tmp/scratch/RtmpQ1iYgK’
‘~/tmp/scratch/RtmpQRe8ej’ ‘~/tmp/scratch/RtmpQy44fC’
‘~/tmp/scratch/RtmpRBNtZH’ ‘~/tmp/scratch/RtmpRIFohH’
‘~/tmp/scratch/RtmpRpkRVd’ ‘~/tmp/scratch/RtmpSDc5Mp’
‘~/tmp/scratch/RtmpSYBVzv’ ‘~/tmp/scratch/RtmpShVtXS’
‘~/tmp/scratch/RtmpT1Rv5N’ ‘~/tmp/scratch/RtmpTMRP26’
‘~/tmp/scratch/RtmpTP7aQ8’ ‘~/tmp/scratch/RtmpTR8Rqq’
‘~/tmp/scratch/RtmpTZYPij’ ‘~/tmp/scratch/RtmpTlZitz’
‘~/tmp/scratch/RtmpV8VILV’ ‘~/tmp/scratch/RtmpVoDGxh’
‘~/tmp/scratch/RtmpVy2OZ1’ ‘~/tmp/scratch/RtmpW0Dxgd’
‘~/tmp/scratch/RtmpW3D6iW’ ‘~/tmp/scratch/RtmpW7C2oG’
‘~/tmp/scratch/RtmpWFcx4y’ ‘~/tmp/scratch/RtmpWQamYn’
‘~/tmp/scratch/RtmpXSdZkx’ ‘~/tmp/scratch/RtmpY09lDJ’
‘~/tmp/scratch/RtmpYsDkwc’ ‘~/tmp/scratch/RtmpZGaSbH’
‘~/tmp/scratch/RtmpZSrK8u’ ‘~/tmp/scratch/RtmpZXIP3M’
‘~/tmp/scratch/Rtmpa0a1QK’ ‘~/tmp/scratch/Rtmpa4kV08’
‘~/tmp/scratch/RtmpaP8JBv’ ‘~/tmp/scratch/RtmpaQ5eD1’
‘~/tmp/scratch/RtmpaWylIt’ ‘~/tmp/scratch/RtmpanyaIr’
‘~/tmp/scratch/Rtmpawylcg’ ‘~/tmp/scratch/Rtmpb37t01’
‘~/tmp/scratch/RtmpbhvkZY’ ‘~/tmp/scratch/RtmpcCEdcH’
‘~/tmp/scratch/Rtmpccg2ve’ ‘~/tmp/scratch/RtmpcexqN8’
‘~/tmp/scratch/RtmpclpWvO’ ‘~/tmp/scratch/RtmpdNDB34’
‘~/tmp/scratch/Rtmpdons36’ ‘~/tmp/scratch/RtmpeNzfvb’
‘~/tmp/scratch/RtmpfCcQKz’ ‘~/tmp/scratch/RtmpgAGOGy’
‘~/tmp/scratch/RtmpgpcT7b’ ‘~/tmp/scratch/RtmpgqlPwm’
‘~/tmp/scratch/RtmphHUlzY’ ‘~/tmp/scratch/Rtmpi1FDR7’
‘~/tmp/scratch/RtmpiJ7kVz’ ‘~/tmp/scratch/RtmpicZuX0’
‘~/tmp/scratch/Rtmpj86Erj’ ‘~/tmp/scratch/RtmpjCoG0Q’
‘~/tmp/scratch/RtmpjtKH72’ ‘~/tmp/scratch/RtmpjwsXQE’
‘~/tmp/scratch/Rtmpk0D5r2’ ‘~/tmp/scratch/Rtmpk5WdVP’
‘~/tmp/scratch/RtmpkP5zTI’ ‘~/tmp/scratch/RtmplGSBAD’
‘~/tmp/scratch/RtmplN13Mr’ ‘~/tmp/scratch/RtmplQVUYp’
‘~/tmp/scratch/RtmpmNRfXk’ ‘~/tmp/scratch/RtmpmrUona’
‘~/tmp/scratch/RtmpnhLhQY’ ‘~/tmp/scratch/RtmpoMwSfe’
‘~/tmp/scratch/RtmpoovhFn’ ‘~/tmp/scratch/Rtmppd3rWx’
‘~/tmp/scratch/RtmpqLehWb’ ‘~/tmp/scratch/RtmprFOrrh’
‘~/tmp/scratch/RtmproYDkn’ ‘~/tmp/scratch/RtmprrpFPI’
‘~/tmp/scratch/RtmpsgDWCI’ ‘~/tmp/scratch/RtmpsjrtDX’
‘~/tmp/scratch/RtmpskdFN5’ ‘~/tmp/scratch/RtmptUPLSi’
‘~/tmp/scratch/RtmptdvpoI’ ‘~/tmp/scratch/RtmpuRw1VZ’
‘~/tmp/scratch/Rtmpv3EV8Y’ ‘~/tmp/scratch/RtmpvFRbPS’
‘~/tmp/scratch/RtmpvGrDBt’ ‘~/tmp/scratch/RtmpvpLu2l’
‘~/tmp/scratch/RtmpwBSD7S’ ‘~/tmp/scratch/RtmpxNEHnH’
‘~/tmp/scratch/RtmpxruAPn’ ‘~/tmp/scratch/Rtmpy6rieW’
‘~/tmp/scratch/Rtmpy7g4Yk’ ‘~/tmp/scratch/Rtmpz3PkMv’
‘~/tmp/scratch/Rtmpz3tlIk’ ‘~/tmp/scratch/Rtmpz5DZ0Z’
‘~/tmp/scratch/Rtmpz5ml4u’ ‘~/tmp/scratch/Rtmpz9XlXJ’
‘~/tmp/scratch/RtmpzDzdxY’ ‘~/tmp/scratch/RtmpzaRG3T’
‘~/tmp/scratch/RtmpzjTAX3’ ‘~/tmp/scratch/cckarox3.s’
‘~/tmp/scratch/quarto-session81797e46fe9846’
‘~/tmp/scratch/xvfb-run.0xEYiX’ ‘~/tmp/scratch/xvfb-run.2HshyO’
‘~/tmp/scratch/xvfb-run.2nmigA’ ‘~/tmp/scratch/xvfb-run.40TS2h’
‘~/tmp/scratch/xvfb-run.4N8pfg’ ‘~/tmp/scratch/xvfb-run.6TEJ82’
‘~/tmp/scratch/xvfb-run.6k2NsD’ ‘~/tmp/scratch/xvfb-run.7aY9uc’
‘~/tmp/scratch/xvfb-run.7cqBnQ’ ‘~/tmp/scratch/xvfb-run.9KkELB’
‘~/tmp/scratch/xvfb-run.A1BfuM’ ‘~/tmp/scratch/xvfb-run.Ai24EH’
‘~/tmp/scratch/xvfb-run.Ayzebq’ ‘~/tmp/scratch/xvfb-run.B4HzlC’
‘~/tmp/scratch/xvfb-run.B8HYmw’ ‘~/tmp/scratch/xvfb-run.BfxafF’
‘~/tmp/scratch/xvfb-run.EuiEPa’ ‘~/tmp/scratch/xvfb-run.HKI5Tf’
‘~/tmp/scratch/xvfb-run.JTPGU5’ ‘~/tmp/scratch/xvfb-run.KGWdaU’
‘~/tmp/scratch/xvfb-run.LDoRpl’ ‘~/tmp/scratch/xvfb-run.NA6M13’
‘~/tmp/scratch/xvfb-run.NdWkVd’ ‘~/tmp/scratch/xvfb-run.P51JjQ’
‘~/tmp/scratch/xvfb-run.PCSNSj’ ‘~/tmp/scratch/xvfb-run.QEOJKI’
‘~/tmp/scratch/xvfb-run.QGU4en’ ‘~/tmp/scratch/xvfb-run.Rw8JZF’
‘~/tmp/scratch/xvfb-run.S4PFLU’ ‘~/tmp/scratch/xvfb-run.T34OBZ’
‘~/tmp/scratch/xvfb-run.TgVdkx’ ‘~/tmp/scratch/xvfb-run.TpzFpP’
‘~/tmp/scratch/xvfb-run.Txl5Vr’ ‘~/tmp/scratch/xvfb-run.UJw7wO’
‘~/tmp/scratch/xvfb-run.V1vp8o’ ‘~/tmp/scratch/xvfb-run.VGBk8v’
‘~/tmp/scratch/xvfb-run.Vo2rtL’ ‘~/tmp/scratch/xvfb-run.XVeIeg’
‘~/tmp/scratch/xvfb-run.XfdIhv’ ‘~/tmp/scratch/xvfb-run.XlBnC2’
‘~/tmp/scratch/xvfb-run.YZMSas’ ‘~/tmp/scratch/xvfb-run.a6grGT’
‘~/tmp/scratch/xvfb-run.bxJaVf’ ‘~/tmp/scratch/xvfb-run.c1qJx0’
‘~/tmp/scratch/xvfb-run.d8RI5z’ ‘~/tmp/scratch/xvfb-run.ewfKGM’
‘~/tmp/scratch/xvfb-run.fCafUD’ ‘~/tmp/scratch/xvfb-run.fQUtzv’
‘~/tmp/scratch/xvfb-run.gwSlxW’ ‘~/tmp/scratch/xvfb-run.iTCynn’
‘~/tmp/scratch/xvfb-run.ihXXXK’ ‘~/tmp/scratch/xvfb-run.jJyU4D’
‘~/tmp/scratch/xvfb-run.jST6AD’ ‘~/tmp/scratch/xvfb-run.lEhHXf’
‘~/tmp/scratch/xvfb-run.mD5eGK’ ‘~/tmp/scratch/xvfb-run.o4zWej’
‘~/tmp/scratch/xvfb-run.sIU9Si’ ‘~/tmp/scratch/xvfb-run.ta2BZr’
‘~/tmp/scratch/xvfb-run.tasWSc’ ‘~/tmp/scratch/xvfb-run.uL6Vkj’
‘~/tmp/scratch/xvfb-run.ucqGpP’ ‘~/tmp/scratch/xvfb-run.vXi2qA’
‘~/tmp/scratch/xvfb-run.vp8ZSI’ ‘~/tmp/scratch/xvfb-run.xAnoUF’
‘~/tmp/scratch/xvfb-run.yS70BF’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘bioutils-case-study.Rmd’ using rmarkdown
--- finished re-building ‘bioutils-case-study.Rmd’
--- re-building ‘rcc-visual-analytics.Rmd’ using rmarkdown
Quitting from rcc-visual-analytics.Rmd:153-162 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_failure>
Error in `httr2::req_perform()`:
! Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Transferred a partial file [ftp.ncbi.nlm.nih.gov]:
end of response with 1030542 bytes missing
---
Backtrace:
▆
1. ├─BioUtils::extract.expression(...)
2. └─BioUtils::load.geo.soft(accession = "GDS507", log.transform = TRUE)
3. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE)
4. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
5. └─GEOquery:::downloadFile(myurl, destfile, mode)
6. ├─base::tryCatch(...)
7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rcc-visual-analytics.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Transferred a partial file [ftp.ncbi.nlm.nih.gov]:
end of response with 1030542 bytes missing
--- failed re-building ‘rcc-visual-analytics.Rmd’
SUMMARY: processing the following file failed:
‘rcc-visual-analytics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘bioutils-case-study.Rmd’ using rmarkdown
Quitting from bioutils-case-study.Rmd:72-76 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_403>
Error in `httr2::req_perform()`:
! HTTP 403 Forbidden.
---
Backtrace:
▆
1. └─BioUtils::load.geo.soft("", "GDS507", log.transform = TRUE)
2. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE)
3. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
4. └─GEOquery:::downloadFile(myurl, destfile, mode)
5. ├─base::tryCatch(...)
6. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
7. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
9. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'bioutils-case-study.Rmd' failed with diagnostics:
HTTP 403 Forbidden.
--- failed re-building ‘bioutils-case-study.Rmd’
--- re-building ‘rcc-visual-analytics.Rmd’ using rmarkdown
Quitting from rcc-visual-analytics.Rmd:153-162 [load]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_403>
Error in `httr2::req_perform()`:
! HTTP 403 Forbidden.
---
Backtrace:
▆
1. ├─BioUtils::extract.expression(...)
2. └─BioUtils::load.geo.soft(accession = "GDS507", log.transform = TRUE)
3. └─GEOquery::getGEO(accession, destdir = tempdir(), GSEMatrix = FALSE)
4. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
5. └─GEOquery:::downloadFile(myurl, destfile, mode)
6. ├─base::tryCatch(...)
7. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
8. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
9. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
10. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rcc-visual-analytics.Rmd' failed with diagnostics:
HTTP 403 Forbidden.
--- failed re-building ‘rcc-visual-analytics.Rmd’
SUMMARY: processing the following files failed:
‘bioutils-case-study.Rmd’ ‘rcc-visual-analytics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64