Last updated on 2026-08-04 02:50:58 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4 | 4.10 | 74.56 | 78.66 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.4 | 2.66 | 51.12 | 53.78 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.4 | 126.52 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.4 | 53.40 | NOTE | |||
| r-devel-windows-x86_64 | 1.4 | 6.00 | 88.00 | 94.00 | NOTE | |
| r-patched-linux-x86_64 | 1.4 | 4.53 | 69.80 | 74.33 | NOTE | |
| r-release-linux-x86_64 | 1.4 | 3.30 | 71.42 | 74.72 | NOTE | |
| r-release-macos-arm64 | 1.4 | 1.00 | 27.00 | 28.00 | NOTE | |
| r-release-macos-x86_64 | 1.4 | 3.00 | 92.00 | 95.00 | NOTE | |
| r-release-windows-x86_64 | 1.4 | 7.00 | 87.00 | 94.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.4 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.4 | 3.00 | 76.00 | 79.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.4 | 8.00 | 112.00 | 120.00 | NOTE |
Version: 1.4
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Rampal S. Etienne <r.s.etienne@rug.nl>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = c("Rampal", "S."),
family = "Etienne",
role = c("aut", "cre"),
email = "r.s.etienne@rug.nl")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.4
Check: Rd files
Result: NOTE
checkRd: (-1) pbd_loglik.Rd:31: Lost braces
31 | \code{pars2[1]} {set the conditioning on non-extinction of the clade (1) or not (0) \cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:32: Lost braces
32 | \code{pars2[2]} {sets whether the likelihood is for the branching times (0) or the phylogeny (1) \cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:33: Lost braces
33 | \code{pars2[3]} {sets whether the first element of the branching times is the stem (1) or the crown (2) age \cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:34: Lost braces
34 | \code{pars2[4]} {sets whether the parameters and likelihood should be shown on screen (1) or not (0) \cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:35: Lost braces
35 | \code{pars2[5]} {sets which method should be used in the ode-solver. Default is 'lsoda'. See package deSolve for details. \cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:36: Lost braces
36 | \code{pars2[6]}{Sets the lower bound of the number of species on which conditioning should be done when cond = 2. Set this to 0 when conditioning should be done on precisely the number of species (default)\cr \cr}
| ^
checkRd: (-1) pbd_loglik.Rd:37: Lost braces
37 | \code{pars2[7]}{Sets the upper bound of the number of species on which conditioning should be done when cond = 2. Set this to 0 when conditioning should be done on precisely the number of species (default)\cr \cr}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.4
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0Gyiz8’ ‘~/tmp/scratch/Rtmp0J6rgo’
‘~/tmp/scratch/Rtmp0kLVac’ ‘~/tmp/scratch/Rtmp0lue2o’
‘~/tmp/scratch/Rtmp2BvlLV’ ‘~/tmp/scratch/Rtmp2QIJ9f’
‘~/tmp/scratch/Rtmp2UzFN7’ ‘~/tmp/scratch/Rtmp3GDAMM’
‘~/tmp/scratch/Rtmp404Uw4’ ‘~/tmp/scratch/Rtmp4jM8pC’
‘~/tmp/scratch/Rtmp53N722’ ‘~/tmp/scratch/Rtmp57ES8Y’
‘~/tmp/scratch/Rtmp5dOepA’ ‘~/tmp/scratch/Rtmp5mG7Vs’
‘~/tmp/scratch/Rtmp61NwUd’ ‘~/tmp/scratch/Rtmp6A64tU’
‘~/tmp/scratch/Rtmp6lVAC0’ ‘~/tmp/scratch/Rtmp7OHOQW’
‘~/tmp/scratch/Rtmp9esSK7’ ‘~/tmp/scratch/Rtmp9gnxoB’
‘~/tmp/scratch/RtmpAIhz2X’ ‘~/tmp/scratch/RtmpASrLwL’
‘~/tmp/scratch/RtmpAmBMVx’ ‘~/tmp/scratch/RtmpBSbTM8’
‘~/tmp/scratch/RtmpBcZFCU’ ‘~/tmp/scratch/RtmpBzlAur’
‘~/tmp/scratch/RtmpCZKwrV’ ‘~/tmp/scratch/RtmpE1ORFN’
‘~/tmp/scratch/RtmpF2n57o’ ‘~/tmp/scratch/RtmpFiyWPR’
‘~/tmp/scratch/RtmpFw2NyL’ ‘~/tmp/scratch/RtmpGnEvdV’
‘~/tmp/scratch/RtmpHSmuFu’ ‘~/tmp/scratch/RtmpHw10tc’
‘~/tmp/scratch/RtmpI0ztbZ’ ‘~/tmp/scratch/RtmpIU8CKk’
‘~/tmp/scratch/RtmpIzUShx’ ‘~/tmp/scratch/RtmpJGssYd’
‘~/tmp/scratch/RtmpJbr1D9’ ‘~/tmp/scratch/RtmpJtZYXX’
‘~/tmp/scratch/RtmpK4Cilw’ ‘~/tmp/scratch/RtmpK6nqqC’
‘~/tmp/scratch/RtmpLtJ9xU’ ‘~/tmp/scratch/RtmpN1nBSe’
‘~/tmp/scratch/RtmpNplfNh’ ‘~/tmp/scratch/RtmpNtnK9P’
‘~/tmp/scratch/RtmpOSY06Q’ ‘~/tmp/scratch/RtmpPBFPzV’
‘~/tmp/scratch/RtmpPC8Mwd’ ‘~/tmp/scratch/RtmpPIbOal’
‘~/tmp/scratch/RtmpQUycpN’ ‘~/tmp/scratch/RtmpR47cYv’
‘~/tmp/scratch/RtmpRKZu80’ ‘~/tmp/scratch/RtmpROx709’
‘~/tmp/scratch/RtmpRXIhww’ ‘~/tmp/scratch/RtmpRvnGUn’
‘~/tmp/scratch/RtmpSKnRoy’ ‘~/tmp/scratch/RtmpSkIt8j’
‘~/tmp/scratch/RtmpTudA4J’ ‘~/tmp/scratch/RtmpU4kBQa’
‘~/tmp/scratch/RtmpUb5whv’ ‘~/tmp/scratch/RtmpV5A9nN’
‘~/tmp/scratch/RtmpVEkSIx’ ‘~/tmp/scratch/RtmpVP63YH’
‘~/tmp/scratch/RtmpVmsJ7b’ ‘~/tmp/scratch/RtmpWhJxnb’
‘~/tmp/scratch/RtmpXbQdmC’ ‘~/tmp/scratch/RtmpXjTd7u’
‘~/tmp/scratch/RtmpY1aV8C’ ‘~/tmp/scratch/RtmpY6vN3V’
‘~/tmp/scratch/RtmpY7YPlz’ ‘~/tmp/scratch/RtmpZjMMvc’
‘~/tmp/scratch/RtmpabdjbL’ ‘~/tmp/scratch/RtmpaqTT27’
‘~/tmp/scratch/RtmpcRlF83’ ‘~/tmp/scratch/Rtmpckr4UP’
‘~/tmp/scratch/Rtmpdm7dcP’ ‘~/tmp/scratch/RtmpeePBec’
‘~/tmp/scratch/RtmpegEunl’ ‘~/tmp/scratch/Rtmpg2OOWr’
‘~/tmp/scratch/Rtmpg3hqha’ ‘~/tmp/scratch/RtmpgdY60D’
‘~/tmp/scratch/RtmphWLXPG’ ‘~/tmp/scratch/RtmphaG0RJ’
‘~/tmp/scratch/RtmphmNcok’ ‘~/tmp/scratch/RtmphnXqKo’
‘~/tmp/scratch/RtmpiTOOaN’ ‘~/tmp/scratch/RtmpjXvgfP’
‘~/tmp/scratch/RtmpjsC2fh’ ‘~/tmp/scratch/RtmpjzRM51’
‘~/tmp/scratch/Rtmpk4F8Xk’ ‘~/tmp/scratch/RtmplU4v38’
‘~/tmp/scratch/RtmpmV9mJG’ ‘~/tmp/scratch/Rtmpmz3Vww’
‘~/tmp/scratch/RtmpnIHjah’ ‘~/tmp/scratch/RtmpnmKNjf’
‘~/tmp/scratch/RtmpnwdD1w’ ‘~/tmp/scratch/RtmppE1WQq’
‘~/tmp/scratch/RtmppGH2jy’ ‘~/tmp/scratch/RtmppdV5xc’
‘~/tmp/scratch/RtmpqWCtnr’ ‘~/tmp/scratch/RtmpqqYGaK’
‘~/tmp/scratch/Rtmpt9Zuh6’ ‘~/tmp/scratch/RtmptehYlq’
‘~/tmp/scratch/Rtmpu0R2L4’ ‘~/tmp/scratch/RtmpuD9MiU’
‘~/tmp/scratch/RtmpuUSgGq’ ‘~/tmp/scratch/Rtmpua2XLk’
‘~/tmp/scratch/RtmpusaTqO’ ‘~/tmp/scratch/Rtmpuw5YEz’
‘~/tmp/scratch/RtmpuxVLGF’ ‘~/tmp/scratch/RtmpveOzDq’
‘~/tmp/scratch/Rtmpvfd9PI’ ‘~/tmp/scratch/Rtmpvivq0q’
‘~/tmp/scratch/RtmpwCqJ39’ ‘~/tmp/scratch/Rtmpwpl0ra’
‘~/tmp/scratch/RtmpxtbVqy’ ‘~/tmp/scratch/Rtmpy2Y1n5’
‘~/tmp/scratch/RtmpykQ5qs’ ‘~/tmp/scratch/Rtmpzvqk2Y’
‘~/tmp/scratch/cc07G68o.s’ ‘~/tmp/scratch/ccbrYJsV.s’
‘~/tmp/scratch/ccirHooC.s’ ‘~/tmp/scratch/xvfb-run.1Px5bZ’
‘~/tmp/scratch/xvfb-run.1uTUbr’ ‘~/tmp/scratch/xvfb-run.2GQmtV’
‘~/tmp/scratch/xvfb-run.5HHVoj’ ‘~/tmp/scratch/xvfb-run.6vswtL’
‘~/tmp/scratch/xvfb-run.96HY5j’ ‘~/tmp/scratch/xvfb-run.9g0DzT’
‘~/tmp/scratch/xvfb-run.DRVW1a’ ‘~/tmp/scratch/xvfb-run.EOQia4’
‘~/tmp/scratch/xvfb-run.F4Q4oD’ ‘~/tmp/scratch/xvfb-run.GPDIxE’
‘~/tmp/scratch/xvfb-run.LVtXzy’ ‘~/tmp/scratch/xvfb-run.LuMlD0’
‘~/tmp/scratch/xvfb-run.OozWSN’ ‘~/tmp/scratch/xvfb-run.T1ZeQr’
‘~/tmp/scratch/xvfb-run.YAmhCC’ ‘~/tmp/scratch/xvfb-run.ZVFQ7W’
‘~/tmp/scratch/xvfb-run.cFicmH’ ‘~/tmp/scratch/xvfb-run.fHNgCR’
‘~/tmp/scratch/xvfb-run.fxxbkF’ ‘~/tmp/scratch/xvfb-run.gdUAIa’
‘~/tmp/scratch/xvfb-run.gzbuzV’ ‘~/tmp/scratch/xvfb-run.hHrdvP’
‘~/tmp/scratch/xvfb-run.i6dFQv’ ‘~/tmp/scratch/xvfb-run.k95Vfu’
‘~/tmp/scratch/xvfb-run.nXQQ2j’ ‘~/tmp/scratch/xvfb-run.oo4GVB’
‘~/tmp/scratch/xvfb-run.p9krQK’ ‘~/tmp/scratch/xvfb-run.pnQbrI’
‘~/tmp/scratch/xvfb-run.rJPv9p’ ‘~/tmp/scratch/xvfb-run.to9IAl’
‘~/tmp/scratch/xvfb-run.uH538R’ ‘~/tmp/scratch/xvfb-run.vJZnv0’
‘~/tmp/scratch/xvfb-run.vfxaJM’ ‘~/tmp/scratch/xvfb-run.y4fWNE’
‘~/tmp/scratch/xvfb-run.yWfBle’ ‘~/tmp/scratch/xvfb-run.zDWbis’
‘/dev/shm/0ae8b13c-c67d-4ca2-b1b4-5fc5c712fb99’
‘/dev/shm/0ae8b13c-c67d-4ca2-b1b4-5fc5c712fb99_counter’
‘/dev/shm/0c11028f-983b-46bf-b10e-da4368b43375’
‘/dev/shm/0c11028f-983b-46bf-b10e-da4368b43375_counter’
‘/dev/shm/11043f8d-55ea-4862-9b25-7be6c59e655d’
‘/dev/shm/11043f8d-55ea-4862-9b25-7be6c59e655d_counter’
‘/dev/shm/187e6aad-4a06-4296-b6bb-1724915f6864’
‘/dev/shm/187e6aad-4a06-4296-b6bb-1724915f6864_counter’
‘/dev/shm/33c65250-9476-4922-8c4a-225bfc0471ef’
‘/dev/shm/33c65250-9476-4922-8c4a-225bfc0471ef_counter’
‘/dev/shm/35cf91b8-99d7-416c-b285-65c3686d0d3a’
‘/dev/shm/35cf91b8-99d7-416c-b285-65c3686d0d3a_counter’
‘/dev/shm/6439b700-04ea-4229-b583-7eba7a6c5092’
‘/dev/shm/6439b700-04ea-4229-b583-7eba7a6c5092_counter’
‘/dev/shm/7a47d566-d67c-432c-960d-288a94114b76’
‘/dev/shm/7a47d566-d67c-432c-960d-288a94114b76_counter’
‘/dev/shm/802d0154-6c7c-4d05-bda8-9795b3fe36a2’
‘/dev/shm/802d0154-6c7c-4d05-bda8-9795b3fe36a2_counter’
‘/dev/shm/8ec62ffa-7401-4104-b96a-7882537ce62f’
‘/dev/shm/8ec62ffa-7401-4104-b96a-7882537ce62f_counter’
‘/dev/shm/9de78b79-6cad-43fc-9f53-155ae422e51f’
‘/dev/shm/9de78b79-6cad-43fc-9f53-155ae422e51f_counter’
‘/dev/shm/b185d887-f9ff-4bde-966a-7ba4d6fd3e3f’
‘/dev/shm/b185d887-f9ff-4bde-966a-7ba4d6fd3e3f_counter’
‘/dev/shm/c0dd7380-6ed7-4331-9106-100605ed360a’
‘/dev/shm/c0dd7380-6ed7-4331-9106-100605ed360a_counter’
‘/dev/shm/cf6acdc8-9914-4c9f-bceb-97fc4d322b04’
‘/dev/shm/cf6acdc8-9914-4c9f-bceb-97fc4d322b04_counter’
‘/dev/shm/e2dd0686-5173-44db-8352-04ac893ac0c1’
‘/dev/shm/e923309a-dc1b-4129-a3aa-608706ddeb9b’
‘/dev/shm/e923309a-dc1b-4129-a3aa-608706ddeb9b_counter’
‘/dev/shm/ec777494-dcbf-40bd-94fb-ef93eece38bb’
‘/dev/shm/ec777494-dcbf-40bd-94fb-ef93eece38bb_counter’
‘/dev/shm/f41b8acd-6db9-48f7-8df9-e26d48721ade’
‘/dev/shm/f41b8acd-6db9-48f7-8df9-e26d48721ade_counter’
‘/dev/shm/f9c4dabe-91ae-4389-ac02-61dc97ed737b’
‘/dev/shm/f9c4dabe-91ae-4389-ac02-61dc97ed737b_counter’
‘/dev/shm/sem.0ae8b13c-c67d-4ca2-b1b4-5fc5c712fb99_bigmemory_counter_mutex’
‘/dev/shm/sem.0c11028f-983b-46bf-b10e-da4368b43375_bigmemory_counter_mutex’
‘/dev/shm/sem.11043f8d-55ea-4862-9b25-7be6c59e655d_bigmemory_counter_mutex’
‘/dev/shm/sem.33c65250-9476-4922-8c4a-225bfc0471ef_bigmemory_counter_mutex’
‘/dev/shm/sem.35cf91b8-99d7-416c-b285-65c3686d0d3a_bigmemory_counter_mutex’
‘/dev/shm/sem.6439b700-04ea-4229-b583-7eba7a6c5092_bigmemory_counter_mutex’
‘/dev/shm/sem.7a47d566-d67c-432c-960d-288a94114b76_bigmemory_counter_mutex’
‘/dev/shm/sem.802d0154-6c7c-4d05-bda8-9795b3fe36a2_bigmemory_counter_mutex’
‘/dev/shm/sem.9de78b79-6cad-43fc-9f53-155ae422e51f_bigmemory_counter_mutex’
‘/dev/shm/sem.b185d887-f9ff-4bde-966a-7ba4d6fd3e3f_bigmemory_counter_mutex’
‘/dev/shm/sem.c0dd7380-6ed7-4331-9106-100605ed360a_bigmemory_counter_mutex’
‘/dev/shm/sem.cf6acdc8-9914-4c9f-bceb-97fc4d322b04_bigmemory_counter_mutex’
‘/dev/shm/sem.e923309a-dc1b-4129-a3aa-608706ddeb9b_bigmemory_counter_mutex’
‘/dev/shm/sem.ec777494-dcbf-40bd-94fb-ef93eece38bb_bigmemory_counter_mutex’
‘/dev/shm/sem.f41b8acd-6db9-48f7-8df9-e26d48721ade_bigmemory_counter_mutex’
‘/dev/shm/sem.f9c4dabe-91ae-4389-ac02-61dc97ed737b_bigmemory_counter_mutex’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.4
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘ade4’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc