CRAN Package Check Results for Package PhenotypeR

Last updated on 2025-05-19 14:49:36 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.4 4.36 540.85 545.21 OK
r-devel-linux-x86_64-debian-gcc 0.1.4 3.15 413.75 416.90 OK
r-devel-linux-x86_64-fedora-clang 0.1.4 792.49 ERROR
r-devel-linux-x86_64-fedora-gcc 0.1.4 839.93 ERROR
r-devel-windows-x86_64 0.1.4 6.00 299.00 305.00 OK
r-patched-linux-x86_64 0.1.4 4.17 528.73 532.90 OK
r-release-linux-x86_64 0.1.4 4.71 532.34 537.05 OK
r-release-macos-arm64 0.1.4 431.00 OK
r-release-macos-x86_64 0.1.4 260.00 OK
r-release-windows-x86_64 0.1.4 6.00 309.00 315.00 OK
r-oldrel-macos-arm64 0.1.4 385.00 OK
r-oldrel-macos-x86_64 0.1.4 262.00 OK
r-oldrel-windows-x86_64 0.1.4 8.00 413.00 421.00 OK

Check Details

Version: 0.1.4
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘a01_DatabaseDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB --- finished re-building ‘a01_DatabaseDiagnostics.Rmd’ --- re-building ‘a02_CodelistDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Quitting from a02_CodelistDiagnostics.Rmd:78-83 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'a02_CodelistDiagnostics.Rmd' failed with diagnostics: Names must be unique. ✖ These names are duplicated: * "codelist_type" at locations 4 and 5. --- failed re-building ‘a02_CodelistDiagnostics.Rmd’ --- re-building ‘a03_CohortDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB --- finished re-building ‘a03_CohortDiagnostics.Rmd’ --- re-building ‘a04_MatchedDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB --- finished re-building ‘a04_MatchedDiagnostics.Rmd’ --- re-building ‘a05_PopulationDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB --- finished re-building ‘a05_PopulationDiagnostics.Rmd’ SUMMARY: processing the following file failed: ‘a02_CodelistDiagnostics.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc