CRAN Package Check Results for Package TmCalculator

Last updated on 2026-08-04 02:51:17 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.0.8	38.86	523.71	562.57	OK
r-devel-linux-x86_64-debian-gcc	1.0.8	34.82	380.53	415.35	NOTE
r-devel-linux-x86_64-fedora-clang	1.0.8	78.00	904.86	982.86	OK
r-devel-linux-x86_64-fedora-gcc	1.0.8	35.00	450.20	485.20	NOTE
r-devel-windows-x86_64	1.0.8	46.00	603.00	649.00	OK
r-patched-linux-x86_64	1.0.7	38.51	503.91	542.42	OK
r-release-linux-x86_64	1.0.8	42.73	499.60	542.33	OK
r-release-macos-arm64	1.0.8	12.00	161.00	173.00	ERROR
r-release-macos-x86_64	1.0.8	31.00	637.00	668.00	ERROR
r-release-windows-x86_64	1.0.8	43.00	649.00	692.00	OK
r-oldrel-macos-arm64	1.0.8	12.00	183.00	195.00	ERROR
r-oldrel-macos-x86_64	1.0.8	32.00	698.00	730.00	ERROR
r-oldrel-windows-x86_64	1.0.8	61.00	722.00	783.00	OK

Check Details

Version: 1.0.8
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0FLRWF’ ‘~/tmp/scratch/Rtmp0Fe7c4’ ‘~/tmp/scratch/Rtmp0MPz4S’ ‘~/tmp/scratch/Rtmp0cNzZS’ ‘~/tmp/scratch/Rtmp0rtUx5’ ‘~/tmp/scratch/Rtmp1rZQ6g’ ‘~/tmp/scratch/Rtmp2Fi50p’ ‘~/tmp/scratch/Rtmp36Gpzy’ ‘~/tmp/scratch/Rtmp3G9Xw3’ ‘~/tmp/scratch/Rtmp3gpNXw’ ‘~/tmp/scratch/Rtmp4E4VzT’ ‘~/tmp/scratch/Rtmp57F10S’ ‘~/tmp/scratch/Rtmp5JNKKd’ ‘~/tmp/scratch/Rtmp5yiH0F’ ‘~/tmp/scratch/Rtmp6D6vpM’ ‘~/tmp/scratch/Rtmp6bgBP9’ ‘~/tmp/scratch/Rtmp6nKg7E’ ‘~/tmp/scratch/Rtmp7559rQ’ ‘~/tmp/scratch/Rtmp7L9DBT’ ‘~/tmp/scratch/Rtmp7Yfyfb’ ‘~/tmp/scratch/Rtmp88tkeV’ ‘~/tmp/scratch/Rtmp8ZBPKy’ ‘~/tmp/scratch/Rtmp8uFXRk’ ‘~/tmp/scratch/Rtmp91QLsZ’ ‘~/tmp/scratch/Rtmp9vOJZw’ ‘~/tmp/scratch/RtmpAEZSS2’ ‘~/tmp/scratch/RtmpANj6nn’ ‘~/tmp/scratch/RtmpAQ8Qqc’ ‘~/tmp/scratch/RtmpAfigYL’ ‘~/tmp/scratch/RtmpB7g0FD’ ‘~/tmp/scratch/RtmpBkStGC’ ‘~/tmp/scratch/RtmpCHF6AE’ ‘~/tmp/scratch/RtmpCI02DH’ ‘~/tmp/scratch/RtmpCwDJfd’ ‘~/tmp/scratch/RtmpD06OXW’ ‘~/tmp/scratch/RtmpDHABkt’ ‘~/tmp/scratch/RtmpDOIvZ4’ ‘~/tmp/scratch/RtmpDkObxT’ ‘~/tmp/scratch/RtmpDy3toK’ ‘~/tmp/scratch/RtmpEsHTeR’ ‘~/tmp/scratch/RtmpF9Fg1R’ ‘~/tmp/scratch/RtmpFkEI4t’ ‘~/tmp/scratch/RtmpFnIfUp’ ‘~/tmp/scratch/RtmpFzFOkH’ ‘~/tmp/scratch/RtmpG8gQ7y’ ‘~/tmp/scratch/RtmpGR3Tyn’ ‘~/tmp/scratch/RtmpGXTnZq’ ‘~/tmp/scratch/RtmpHF1wcM’ ‘~/tmp/scratch/RtmpHJYs7h’ ‘~/tmp/scratch/RtmpHSphY3’ ‘~/tmp/scratch/RtmpHwXp1B’ ‘~/tmp/scratch/RtmpI5J8O9’ ‘~/tmp/scratch/RtmpIGf26r’ ‘~/tmp/scratch/RtmpIWtIQD’ ‘~/tmp/scratch/RtmpIkBugt’ ‘~/tmp/scratch/RtmpK5dJW5’ ‘~/tmp/scratch/RtmpKUCg6k’ ‘~/tmp/scratch/RtmpKtcxOj’ ‘~/tmp/scratch/RtmpLHJelb’ ‘~/tmp/scratch/RtmpLWkOZv’ ‘~/tmp/scratch/RtmpLjJyqi’ ‘~/tmp/scratch/RtmpLorXk3’ ‘~/tmp/scratch/RtmpM4GFEQ’ ‘~/tmp/scratch/RtmpMjcgBl’ ‘~/tmp/scratch/RtmpMvRraw’ ‘~/tmp/scratch/RtmpO0q7Pr’ ‘~/tmp/scratch/RtmpOG1zUn’ ‘~/tmp/scratch/RtmpPb8FP0’ ‘~/tmp/scratch/RtmpQ3tmyL’ ‘~/tmp/scratch/RtmpR0qrCT’ ‘~/tmp/scratch/RtmpR6w4VU’ ‘~/tmp/scratch/RtmpREsG2c’ ‘~/tmp/scratch/RtmpRGU28b’ ‘~/tmp/scratch/RtmpRdMqfc’ ‘~/tmp/scratch/RtmpRvhjuH’ ‘~/tmp/scratch/RtmpS1RIai’ ‘~/tmp/scratch/RtmpS466HA’ ‘~/tmp/scratch/RtmpSGLBpX’ ‘~/tmp/scratch/RtmpU0wMXe’ ‘~/tmp/scratch/RtmpU3VUHD’ ‘~/tmp/scratch/RtmpV0b4Pm’ ‘~/tmp/scratch/RtmpVGhUlX’ ‘~/tmp/scratch/RtmpXZYD2s’ ‘~/tmp/scratch/RtmpY4PyH7’ ‘~/tmp/scratch/RtmpYRhe37’ ‘~/tmp/scratch/RtmpYedzdU’ ‘~/tmp/scratch/RtmpZV2sqL’ ‘~/tmp/scratch/RtmpZYqjc8’ ‘~/tmp/scratch/RtmpZxM4Wn’ ‘~/tmp/scratch/RtmpZxaGVw’ ‘~/tmp/scratch/RtmpZzQKRw’ ‘~/tmp/scratch/RtmpaeZfSp’ ‘~/tmp/scratch/Rtmpal9vDu’ ‘~/tmp/scratch/RtmpbLRD3K’ ‘~/tmp/scratch/RtmpbPo4AW’ ‘~/tmp/scratch/RtmpbntPGQ’ ‘~/tmp/scratch/Rtmpc0VcyP’ ‘~/tmp/scratch/Rtmpc6gpUb’ ‘~/tmp/scratch/RtmpcJfl7X’ ‘~/tmp/scratch/RtmpcOsbSL’ ‘~/tmp/scratch/RtmpdOnPAE’ ‘~/tmp/scratch/RtmpdYpNs0’ ‘~/tmp/scratch/RtmpdoS1Dp’ ‘~/tmp/scratch/RtmpfVOaq5’ ‘~/tmp/scratch/RtmpfdLrQM’ ‘~/tmp/scratch/Rtmpgio5Cl’ ‘~/tmp/scratch/RtmpgviyM3’ ‘~/tmp/scratch/Rtmpgxoj9W’ ‘~/tmp/scratch/Rtmph2oTv3’ ‘~/tmp/scratch/RtmphPAplS’ ‘~/tmp/scratch/Rtmphbzf8X’ ‘~/tmp/scratch/RtmphxeBKY’ ‘~/tmp/scratch/RtmpiIXhDG’ ‘~/tmp/scratch/RtmpiocGA0’ ‘~/tmp/scratch/RtmpjDsmZ4’ ‘~/tmp/scratch/RtmpjXmVlQ’ ‘~/tmp/scratch/RtmpjaG4sE’ ‘~/tmp/scratch/RtmplF6k3V’ ‘~/tmp/scratch/RtmplOCnJP’ ‘~/tmp/scratch/RtmpmBcJhh’ ‘~/tmp/scratch/RtmpmgZOnw’ ‘~/tmp/scratch/RtmpmmQOuK’ ‘~/tmp/scratch/RtmpnLvNU0’ ‘~/tmp/scratch/RtmpnPSExP’ ‘~/tmp/scratch/RtmpnWM4X1’ ‘~/tmp/scratch/Rtmpnd9SUj’ ‘~/tmp/scratch/RtmpoHpPdR’ ‘~/tmp/scratch/RtmpoeFup5’ ‘~/tmp/scratch/RtmpoxReuO’ ‘~/tmp/scratch/RtmppEK9pK’ ‘~/tmp/scratch/RtmppWnO6z’ ‘~/tmp/scratch/RtmppuFl6N’ ‘~/tmp/scratch/RtmpqeIkiW’ ‘~/tmp/scratch/RtmprDOXJs’ ‘~/tmp/scratch/RtmprisjdJ’ ‘~/tmp/scratch/RtmprmdbnJ’ ‘~/tmp/scratch/RtmpryOwZi’ ‘~/tmp/scratch/RtmpsHBkCo’ ‘~/tmp/scratch/RtmpsIWrhu’ ‘~/tmp/scratch/RtmpsQiMDA’ ‘~/tmp/scratch/Rtmpt45WSD’ ‘~/tmp/scratch/RtmptFNJPS’ ‘~/tmp/scratch/RtmptJVEWG’ ‘~/tmp/scratch/RtmptLvLhq’ ‘~/tmp/scratch/Rtmptrx7BM’ ‘~/tmp/scratch/Rtmpuc1sRT’ ‘~/tmp/scratch/Rtmpuwj5gQ’ ‘~/tmp/scratch/RtmpvEoTRg’ ‘~/tmp/scratch/RtmpvPFWWe’ ‘~/tmp/scratch/RtmpvdM5sL’ ‘~/tmp/scratch/RtmpwYOVbm’ ‘~/tmp/scratch/RtmpwiuJCH’ ‘~/tmp/scratch/RtmpwnpqyF’ ‘~/tmp/scratch/RtmpwzLtc6’ ‘~/tmp/scratch/Rtmpx3NWMY’ ‘~/tmp/scratch/RtmpxEolrq’ ‘~/tmp/scratch/RtmpxQ1dup’ ‘~/tmp/scratch/Rtmpxb3mWl’ ‘~/tmp/scratch/RtmpxnIwYH’ ‘~/tmp/scratch/Rtmpxux6Tu’ ‘~/tmp/scratch/Rtmpy53CEs’ ‘~/tmp/scratch/RtmpyMUFZ0’ ‘~/tmp/scratch/Rtmpz1gNIv’ ‘~/tmp/scratch/Rtmpzp6fDT’ ‘~/tmp/scratch/xvfb-run.1YEdTQ’ ‘~/tmp/scratch/xvfb-run.1eYoEx’ ‘~/tmp/scratch/xvfb-run.2ZuBee’ ‘~/tmp/scratch/xvfb-run.2xeqbD’ ‘~/tmp/scratch/xvfb-run.2zIVPx’ ‘~/tmp/scratch/xvfb-run.3rKYeb’ ‘~/tmp/scratch/xvfb-run.4O1kui’ ‘~/tmp/scratch/xvfb-run.4wlkUj’ ‘~/tmp/scratch/xvfb-run.6OYepE’ ‘~/tmp/scratch/xvfb-run.7NehJ9’ ‘~/tmp/scratch/xvfb-run.8OWUXG’ ‘~/tmp/scratch/xvfb-run.8ZfZLV’ ‘~/tmp/scratch/xvfb-run.9jH59w’ ‘~/tmp/scratch/xvfb-run.9vHwSH’ ‘~/tmp/scratch/xvfb-run.9xYZV8’ ‘~/tmp/scratch/xvfb-run.A46jQq’ ‘~/tmp/scratch/xvfb-run.At85bn’ ‘~/tmp/scratch/xvfb-run.B4Vvoj’ ‘~/tmp/scratch/xvfb-run.BR3eZZ’ ‘~/tmp/scratch/xvfb-run.Bit0GV’ ‘~/tmp/scratch/xvfb-run.DSdBOS’ ‘~/tmp/scratch/xvfb-run.EvAMCW’ ‘~/tmp/scratch/xvfb-run.FBqioU’ ‘~/tmp/scratch/xvfb-run.IZAbsr’ ‘~/tmp/scratch/xvfb-run.IfnxCH’ ‘~/tmp/scratch/xvfb-run.Ij2Xvc’ ‘~/tmp/scratch/xvfb-run.J6Pr8y’ ‘~/tmp/scratch/xvfb-run.KRNWy0’ ‘~/tmp/scratch/xvfb-run.L0XeWB’ ‘~/tmp/scratch/xvfb-run.LScTJz’ ‘~/tmp/scratch/xvfb-run.Lg2KFi’ ‘~/tmp/scratch/xvfb-run.M2KpVj’ ‘~/tmp/scratch/xvfb-run.MWcpPv’ ‘~/tmp/scratch/xvfb-run.NWjedB’ ‘~/tmp/scratch/xvfb-run.Nk6s1J’ ‘~/tmp/scratch/xvfb-run.No02v6’ ‘~/tmp/scratch/xvfb-run.OVhUYA’ ‘~/tmp/scratch/xvfb-run.Oo38Zz’ ‘~/tmp/scratch/xvfb-run.PEwjJV’ ‘~/tmp/scratch/xvfb-run.Q5y7RH’ ‘~/tmp/scratch/xvfb-run.QKtkPT’ ‘~/tmp/scratch/xvfb-run.QPGJ3I’ ‘~/tmp/scratch/xvfb-run.Qc55Uq’ ‘~/tmp/scratch/xvfb-run.ToGdj9’ ‘~/tmp/scratch/xvfb-run.U8gT0h’ ‘~/tmp/scratch/xvfb-run.VCgYB9’ ‘~/tmp/scratch/xvfb-run.Vivgdq’ ‘~/tmp/scratch/xvfb-run.WzWeBV’ ‘~/tmp/scratch/xvfb-run.YVm0wz’ ‘~/tmp/scratch/xvfb-run.Z31Tr0’ ‘~/tmp/scratch/xvfb-run.ZT29XT’ ‘~/tmp/scratch/xvfb-run.ZZPE5e’ ‘~/tmp/scratch/xvfb-run.ZwDFkJ’ ‘~/tmp/scratch/xvfb-run.aBM6wp’ ‘~/tmp/scratch/xvfb-run.ad7XF9’ ‘~/tmp/scratch/xvfb-run.bdRoFM’ ‘~/tmp/scratch/xvfb-run.caBvxJ’ ‘~/tmp/scratch/xvfb-run.dXr9PG’ ‘~/tmp/scratch/xvfb-run.dkHik6’ ‘~/tmp/scratch/xvfb-run.dqVYWn’ ‘~/tmp/scratch/xvfb-run.gXiYw8’ ‘~/tmp/scratch/xvfb-run.i10FG7’ ‘~/tmp/scratch/xvfb-run.iDYnEP’ ‘~/tmp/scratch/xvfb-run.iDh6Ul’ ‘~/tmp/scratch/xvfb-run.iexifV’ ‘~/tmp/scratch/xvfb-run.jSrgDL’ ‘~/tmp/scratch/xvfb-run.m6ugfq’ ‘~/tmp/scratch/xvfb-run.mzSR50’ ‘~/tmp/scratch/xvfb-run.nYtz0R’ ‘~/tmp/scratch/xvfb-run.nzWCwn’ ‘~/tmp/scratch/xvfb-run.oYVzMM’ ‘~/tmp/scratch/xvfb-run.oleO4y’ ‘~/tmp/scratch/xvfb-run.owwCsb’ ‘~/tmp/scratch/xvfb-run.pF0zLs’ ‘~/tmp/scratch/xvfb-run.pYZq9f’ ‘~/tmp/scratch/xvfb-run.pqvKJO’ ‘~/tmp/scratch/xvfb-run.s7T3OU’ ‘~/tmp/scratch/xvfb-run.sh0WaC’ ‘~/tmp/scratch/xvfb-run.vJ6HhW’ ‘~/tmp/scratch/xvfb-run.wphiYf’ ‘~/tmp/scratch/xvfb-run.wybyRE’ ‘~/tmp/scratch/xvfb-run.xAXJW7’ ‘~/tmp/scratch/xvfb-run.z30f9C’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.8
Check: for non-standard things in the check directory
Result: NOTE Found the following files/directories: ‘BSgenome.Ecoli.NCBI.ASM584v2’ ‘BSgenomeForge’ Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0.8
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘genome_wide_tm_ecoli.Rmd’ using rmarkdown trying URL 'https://bioconductor.org/packages/3.23/bioc/bin/macosx/sonoma-arm64/contrib/4.6/BSgenomeForge_1.12.0.tgz' Content type 'application/x-gzip' length 833586 bytes (814 KB) ================================================== downloaded 814 KB trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz' Content type 'application/x-gzip' length 1379902 bytes (1.3 MB) ================================================== downloaded 1.3 MB Quitting from genome_wide_tm_ecoli.Rmd:313-319 [linear-full] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR") --- Backtrace: ▆ 1. └─TmCalculator::plot_genome_track(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'genome_wide_tm_ecoli.Rmd' failed with diagnostics: Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR") --- failed re-building ‘genome_wide_tm_ecoli.Rmd’ SUMMARY: processing the following file failed: ‘genome_wide_tm_ecoli.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-arm64

Version: 1.0.8
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘genome_wide_tm_ecoli.Rmd’ using rmarkdown trying URL 'https://bioconductor.org/packages/3.23/bioc/bin/macosx/big-sur-x86_64/contrib/4.6/BSgenomeForge_1.12.0.tgz' Content type 'application/x-gzip' length 829233 bytes (809 KB) ================================================== downloaded 809 KB trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz' Content type 'application/x-gzip' length 1379902 bytes (1.3 MB) ================================================== downloaded 1.3 MB Quitting from genome_wide_tm_ecoli.Rmd:313-319 [linear-full] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR") --- Backtrace: ▆ 1. └─TmCalculator::plot_genome_track(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'genome_wide_tm_ecoli.Rmd' failed with diagnostics: Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR") --- failed re-building ‘genome_wide_tm_ecoli.Rmd’ SUMMARY: processing the following file failed: ‘genome_wide_tm_ecoli.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64

Version: 1.0.8
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘genome_wide_tm_ecoli.Rmd’ using rmarkdown trying URL 'https://bioconductor.org/packages/3.22/bioc/bin/macosx/big-sur-arm64/contrib/4.5/BSgenomeForge_1.10.2.tgz' Content type 'application/x-compressed-tar' length 832361 bytes (812 KB) ================================================== downloaded 812 KB trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz' Content type 'application/x-gzip' length 1379902 bytes (1.3 MB) ================================================== downloaded 1.3 MB 2026-08-04 11:14:28.181 R[9954:163929] XType: Using static font registry. Quitting from genome_wide_tm_ecoli.Rmd:313-319 [linear-full] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR") --- Backtrace: ▆ 1. └─TmCalculator::plot_genome_track(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'genome_wide_tm_ecoli.Rmd' failed with diagnostics: Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR") --- failed re-building ‘genome_wide_tm_ecoli.Rmd’ SUMMARY: processing the following file failed: ‘genome_wide_tm_ecoli.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-macos-arm64

Version: 1.0.8
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘genome_wide_tm_ecoli.Rmd’ using rmarkdown trying URL 'https://bioconductor.org/packages/3.21/bioc/bin/macosx/big-sur-x86_64/contrib/4.5/BSgenomeForge_1.8.1.tgz' Content type 'application/x-compressed-tar' length 827147 bytes (807 KB) ================================================== downloaded 807 KB trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz' Content type 'application/x-gzip' length 1379902 bytes (1.3 MB) ================================================== downloaded 1.3 MB Quitting from genome_wide_tm_ecoli.Rmd:313-319 [linear-full] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR") --- Backtrace: ▆ 1. └─TmCalculator::plot_genome_track(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'genome_wide_tm_ecoli.Rmd' failed with diagnostics: Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR") --- failed re-building ‘genome_wide_tm_ecoli.Rmd’ SUMMARY: processing the following file failed: ‘genome_wide_tm_ecoli.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-macos-x86_64