Last updated on 2025-02-18 02:50:32 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.2 | 13.24 | 412.41 | 425.65 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.3.3 | 9.34 | 264.74 | 274.08 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.3.3 | 755.04 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.3 | 670.77 | OK | |||
| r-devel-macos-arm64 | 0.3.2 | 154.00 | OK | |||
| r-devel-macos-x86_64 | 0.3.3 | 292.00 | OK | |||
| r-devel-windows-x86_64 | 0.3.3 | 13.00 | 329.00 | 342.00 | OK | |
| r-patched-linux-x86_64 | 0.3.2 | 13.29 | 361.80 | 375.09 | ERROR | |
| r-release-linux-x86_64 | 0.3.3 | 12.88 | 399.51 | 412.39 | OK | |
| r-release-macos-arm64 | 0.3.2 | 160.00 | OK | |||
| r-release-macos-x86_64 | 0.3.3 | 424.00 | OK | |||
| r-release-windows-x86_64 | 0.3.3 | 15.00 | 348.00 | 363.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.2 | 167.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.3.3 | 387.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.3.3 | 14.00 | 400.00 | 414.00 | OK |
Version: 0.3.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [241s/308s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(censored)
Loading required package: parsnip
Loading required package: survival
>
> test_check("censored")
[ FAIL 13 | WARN 0 | SKIP 11 | PASS 609 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (11): 'test-bag_tree-rpart.R:92:3',
'test-proportional_hazards-glmnet.R:30:3',
'test-proportional_hazards-glmnet.R:1081:3',
'test-proportional_hazards-glmnet.R:1109:3',
'test-proportional_hazards-glmnet.R:1118:3',
'test-proportional_hazards-glmnet.R:1140:3',
'test-proportional_hazards-glmnet.R:1247:3',
'test-proportional_hazards-survival.R:143:3',
'test-proportional_hazards.R:10:3',
'test-survival_reg-flexsurvspline.R:465:3', 'test-survival_reg.R:9:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-bag_tree-rpart.R:109:3'): survival predictions ─────────────────
Error in `predict(f_fit, lung, type = "survival")`: When using `type` values of "survival" or "hazard" a numeric vector `eval_time` should also be given.
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-bag_tree-rpart.R:109:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─stats::predict(f_fit, lung, type = "survival")
8. └─parsnip::predict.model_fit(f_fit, lung, type = "survival")
9. └─parsnip:::check_pred_type_dots(object, type, ...)
10. └─cli::cli_abort(...)
11. └─rlang::abort(...)
── Error ('test-boost_tree-mboost.R:73:3'): survival predictions ───────────────
Error in `predict(f_fit, lung, type = "survival")`: When using `type` values of "survival" or "hazard" a numeric vector `eval_time` should also be given.
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-boost_tree-mboost.R:73:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─stats::predict(f_fit, lung, type = "survival")
8. └─parsnip::predict.model_fit(f_fit, lung, type = "survival")
9. └─parsnip:::check_pred_type_dots(object, type, ...)
10. └─cli::cli_abort(...)
11. └─rlang::abort(...)
── Error ('test-decision_tree-partykit.R:76:3'): survival predictions ──────────
Error in `predict(f_fit, lung, type = "survival")`: When using `type` values of "survival" or "hazard" a numeric vector `eval_time` should also be given.
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-decision_tree-partykit.R:76:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─stats::predict(f_fit, lung, type = "survival")
8. └─parsnip::predict.model_fit(f_fit, lung, type = "survival")
9. └─parsnip:::check_pred_type_dots(object, type, ...)
10. └─cli::cli_abort(...)
11. └─rlang::abort(...)
── Error ('test-decision_tree-rpart.R:65:3'): survival predictions ─────────────
Error in `predict(f_fit, lung, type = "survival")`: When using `type` values of "survival" or "hazard" a numeric vector `eval_time` should also be given.
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-decision_tree-rpart.R:65:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─stats::predict(f_fit, lung, type = "survival")
8. └─parsnip::predict.model_fit(f_fit, lung, type = "survival")
9. └─parsnip:::check_pred_type_dots(object, type, ...)
10. └─cli::cli_abort(...)
11. └─rlang::abort(...)
── Error ('test-proportional_hazards-survival.R:168:3'): survival predictions without strata ──
Error in `predict(f_fit, lung, type = "survival")`: When using `type` values of "survival" or "hazard" a numeric vector `eval_time` should also be given.
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-proportional_hazards-survival.R:168:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─stats::predict(f_fit, lung, type = "survival")
8. └─parsnip::predict.model_fit(f_fit, lung, type = "survival")
9. └─parsnip:::check_pred_type_dots(object, type, ...)
10. └─cli::cli_abort(...)
11. └─rlang::abort(...)
── Error ('test-rand_forest-aorsf.R:88:3'): survival predictions ───────────────
Error in `predict(f_fit, lung_orsf, type = "survival")`: When using `type` values of "survival" or "hazard" a numeric vector `eval_time` should also be given.
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-rand_forest-aorsf.R:88:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─stats::predict(f_fit, lung_orsf, type = "survival")
8. └─parsnip::predict.model_fit(f_fit, lung_orsf, type = "survival")
9. └─parsnip:::check_pred_type_dots(object, type, ...)
10. └─cli::cli_abort(...)
11. └─rlang::abort(...)
── Error ('test-rand_forest-partykit.R:88:3'): survival predictions ────────────
Error in `predict(f_fit, lung, type = "survival")`: When using `type` values of "survival" or "hazard" a numeric vector `eval_time` should also be given.
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-rand_forest-partykit.R:88:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─stats::predict(f_fit, lung, type = "survival")
8. └─parsnip::predict.model_fit(f_fit, lung, type = "survival")
9. └─parsnip:::check_pred_type_dots(object, type, ...)
10. └─cli::cli_abort(...)
11. └─rlang::abort(...)
── Error ('test-survival_reg-flexsurv.R:223:3'): quantile predictions ──────────
Error in `p <= 1`: comparison (<=) is not possible for language types
Backtrace:
▆
1. ├─stats::predict(fit_s, new_data = bladder[1:3, ], type = "quantile") at test-survival_reg-flexsurv.R:223:3
2. ├─parsnip::predict.model_fit(...)
3. │ ├─parsnip:::predict_quantile(...)
4. │ └─parsnip::predict_quantile.model_fit(...)
5. │ └─rlang::eval_tidy(pred_call)
6. ├─stats::predict(...)
7. └─flexsurv:::predict.flexsurvreg(...)
── Error ('test-survival_reg-flexsurv.R:400:3'): `fix_xy()` works ──────────────
Error in `predict(f_fit, new_data = lung_pred, type = "quantile", quantile = c(0.2,
0.8))`: The ellipses are not used to pass args to the model function's predict function. These arguments cannot be used: "bad_args"
Backtrace:
▆
1. ├─stats::predict(...) at test-survival_reg-flexsurv.R:400:3
2. └─parsnip::predict.model_fit(...)
3. └─parsnip:::check_pred_type_dots(object, type, ...)
4. └─cli::cli_abort(...)
5. └─rlang::abort(...)
── Error ('test-survival_reg-flexsurvspline.R:213:3'): quantile predictions ────
Error in `p <= 1`: comparison (<=) is not possible for language types
Backtrace:
▆
1. ├─stats::predict(fit_s, new_data = bladder[1:3, ], type = "quantile") at test-survival_reg-flexsurvspline.R:213:3
2. ├─parsnip::predict.model_fit(...)
3. │ ├─parsnip:::predict_quantile(...)
4. │ └─parsnip::predict_quantile.model_fit(...)
5. │ └─rlang::eval_tidy(pred_call)
6. ├─stats::predict(...)
7. └─flexsurv:::predict.flexsurvreg(...)
── Error ('test-survival_reg-flexsurvspline.R:408:3'): `fix_xy()` works ────────
Error in `predict(f_fit, new_data = lung_pred, type = "quantile", quantile = c(0.2,
0.8))`: The ellipses are not used to pass args to the model function's predict function. These arguments cannot be used: "bad_args"
Backtrace:
▆
1. ├─stats::predict(...) at test-survival_reg-flexsurvspline.R:408:3
2. └─parsnip::predict.model_fit(...)
3. └─parsnip:::check_pred_type_dots(object, type, ...)
4. └─cli::cli_abort(...)
5. └─rlang::abort(...)
── Error ('test-survival_reg-survival.R:129:3'): prediction of survival time quantile ──
Error in `predict(res, head(lung), type = "quantile", quantile = (2:4)/5)`: The ellipses are not used to pass args to the model function's predict function. These arguments cannot be used: "bad_args"
Backtrace:
▆
1. ├─stats::predict(res, head(lung), type = "quantile", quantile = (2:4)/5) at test-survival_reg-survival.R:129:3
2. └─parsnip::predict.model_fit(res, head(lung), type = "quantile", quantile = (2:4)/5)
3. └─parsnip:::check_pred_type_dots(object, type, ...)
4. └─cli::cli_abort(...)
5. └─rlang::abort(...)
── Error ('test-survival_reg-survival.R:212:3'): `fix_xy()` works ──────────────
Error in `predict(f_fit, new_data = lung_pred, type = "quantile", quantile = c(0.2,
0.8))`: The ellipses are not used to pass args to the model function's predict function. These arguments cannot be used: "bad_args"
Backtrace:
▆
1. ├─stats::predict(...) at test-survival_reg-survival.R:212:3
2. └─parsnip::predict.model_fit(...)
3. └─parsnip:::check_pred_type_dots(object, type, ...)
4. └─cli::cli_abort(...)
5. └─rlang::abort(...)
[ FAIL 13 | WARN 0 | SKIP 11 | PASS 609 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64