Last updated on 2026-03-20 13:51:51 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.2 | 53.27 | 446.18 | 499.45 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.2 | 34.21 | 279.36 | 313.57 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.3 | 96.00 | 652.86 | 748.86 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.2.3 | 82.00 | 621.64 | 703.64 | OK | |
| r-devel-macos-arm64 | 1.2.3 | 11.00 | 92.00 | 103.00 | OK | |
| r-devel-windows-x86_64 | 1.2.2 | 58.00 | 444.00 | 502.00 | OK | |
| r-patched-linux-x86_64 | 1.2.2 | 51.06 | 398.35 | 449.41 | OK | |
| r-release-linux-x86_64 | 1.2.2 | 47.91 | 396.34 | 444.25 | OK | |
| r-release-macos-arm64 | 1.2.2 | 4.00 | ERROR | |||
| r-release-macos-x86_64 | 1.2.2 | 37.00 | 292.00 | 329.00 | ERROR | |
| r-release-windows-x86_64 | 1.2.2 | 48.00 | 449.00 | 497.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.3 | 9.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.2.3 | 33.00 | 377.00 | 410.00 | OK | |
| r-oldrel-windows-x86_64 | 1.2.2 | 74.00 | 575.00 | 649.00 | OK |
Version: 1.2.2
Check: package dependencies
Result: ERROR
Packages required but not available: 'SNPRelate', 'snpStats'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Version: 1.2.2
Check: examples
Result: ERROR
Running examples in ‘dartR.base-Ex.R’ failed
The error most likely occurred in:
> ### Name: gl.filter.ld
> ### Title: Filters loci based on linkage disequilibrium (LD)
> ### Aliases: gl.filter.ld
>
> ### ** Examples
>
> if ((requireNamespace("snpStats", quietly = TRUE)) & (requireNamespace("fields", quietly = TRUE))) {
+ test <- gl.filter.callrate(platypus.gl, threshold = 1)
+ test <- gl.filter.monomorphs(test)
+ report <- gl.report.ld.map(test)
+ res <- gl.filter.ld(x=test,ld.report = report)
+ }
Starting gl.filter.callrate
Processing genlight object with SNP data
Warning: data include loci that are scored NA across all individuals.
Consider filtering using gl <- gl.filter.allna(gl)
Warning: Data may include monomorphic loci in call rate
calculations for filtering
Recalculating Call Rate
Removing loci based on Call Rate, threshold = 1
Completed: gl.filter.callrate
Starting gl.filter.monomorphs
Processing genlight object with SNP data
Identifying monomorphic loci
Removing monomorphic loci and loci with all missing
data
Completed: gl.filter.monomorphs
Starting gl.report.ld.map
Processing genlight object with SNP data
There is no information in the chromosome/position slot of the genlight object.
Assigning the same chromosome ('1') to all the SNPs in the dataset.
Assigning a sequence from 1 to n loci as the position of each SNP.
Calculating LD for all possible SNP pair combinations Calculating pairwise LD in population SEVERN_ABOVE
*** caught segfault ***
address 0x1, cause 'memory not mapped'
Traceback:
1: snpStats::ld(genotype_loci, genotype_loci, stats = ld.stat)
2: gl.report.ld.map(test)
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-release-macos-x86_64
Version: 1.2.3
Check: package dependencies
Result: ERROR
Packages required but not available: 'SNPRelate', 'snpStats'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64