Last updated on 2026-04-24 02:52:44 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 21.70 | 517.63 | 539.33 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.1 | 16.93 | 428.23 | 445.16 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.1 | 42.00 | 657.59 | 699.59 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.1 | 38.00 | 549.31 | 587.31 | OK | |
| r-devel-macos-arm64 | 0.1.1 | 6.00 | 71.00 | 77.00 | ERROR | |
| r-devel-windows-x86_64 | 0.1.1 | 24.00 | 735.00 | 759.00 | OK | |
| r-patched-linux-x86_64 | 0.1.1 | 22.13 | 561.40 | 583.53 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 19.79 | 528.35 | 548.14 | OK | |
| r-release-macos-arm64 | 0.1.1 | 6.00 | 108.00 | 114.00 | OK | |
| r-release-macos-x86_64 | 0.1.1 | 18.00 | 608.00 | 626.00 | OK | |
| r-release-windows-x86_64 | 0.1.1 | 28.00 | 536.00 | 564.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | 6.00 | 110.00 | 116.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.1 | 18.00 | 757.00 | 775.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.1 | 31.00 | 490.00 | 521.00 | OK |
Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘alternative_distributions.Rmd’ using rmarkdown
specified C++17
make cmd is
make -f '/Library/Frameworks/R.framework/Resources/etc/Makeconf' -f '/Library/Frameworks/R.framework/Resources/share/make/shlib.mk' CXX='$(CXX17) $(CXX17STD)' CXXFLAGS='$(CXX17FLAGS)' CXXPICFLAGS='$(CXX17PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX17LDFLAGS)' SHLIB_LD='$(SHLIB_CXX17LD)' SHLIB='fileb0da79e6f8a.so' OBJECTS='fileb0da79e6f8a.o'
make would use
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/src/" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include/" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include '/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/fun/Eigen.hpp' -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1 -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fileb0da79e6f8a.cpp -o fileb0da79e6f8a.o
if test "zfileb0da79e6f8a.o" != "z"; then \
echo clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L"/Library/Frameworks/R.framework/Resources/lib" -L/opt/R/arm64/lib -o fileb0da79e6f8a.so fileb0da79e6f8a.o '/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rstan/lib//libStanServices.a' -L'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/lib/' -lStanHeaders -L'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/lib/' -ltbb -L/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R ; \
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L"/Library/Frameworks/R.framework/Resources/lib" -L/opt/R/arm64/lib -o fileb0da79e6f8a.so fileb0da79e6f8a.o '/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rstan/lib//libStanServices.a' -L'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/lib/' -lStanHeaders -L'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/lib/' -ltbb -L/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R ; \
fi
Quitting from alternative_distributions.Rmd:90-104 [model]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `sink()`:
! invalid connection
---
Backtrace:
▆
1. └─hmetad::fit_metad(...)
2. └─brms::brm(formula, data.aggregated, stanvars = sv, ...)
3. └─brms::do_call(compile_model, compile_args)
4. └─brms:::eval2(call, envir = args, enclos = envir)
5. └─base::eval(expr, envir, ...)
6. └─base::eval(expr, envir, ...)
7. └─brms (local) .fun(...)
8. └─brms (local) .compile_model(model, ...)
9. ├─brms:::eval_silent(...)
10. │ └─base::eval(expr, envir)
11. │ └─base::eval(expr, envir)
12. └─brms::do_call(rstan::stan_model, args)
13. └─brms:::eval2(call, envir = args, enclos = envir)
14. └─base::eval(expr, envir, ...)
15. └─base::eval(expr, envir, ...)
16. └─rstan (local) .fun(model_code = .x1)
17. └─rstan:::cxxfunctionplus(...)
18. └─base::sink(type = "output")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'alternative_distributions.Rmd' failed with diagnostics:
invalid connection
--- failed re-building ‘alternative_distributions.Rmd’
--- re-building ‘categorical.Rmd’ using rmarkdown
--- finished re-building ‘categorical.Rmd’
--- re-building ‘history.Rmd’ using rmarkdown
--- finished re-building ‘history.Rmd’
--- re-building ‘hmetad.Rmd’ using rmarkdown
specified C++17
make cmd is
make -f '/Library/Frameworks/R.framework/Resources/etc/Makeconf' -f '/Library/Frameworks/R.framework/Resources/share/make/shlib.mk' CXX='$(CXX17) $(CXX17STD)' CXXFLAGS='$(CXX17FLAGS)' CXXPICFLAGS='$(CXX17PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX17LDFLAGS)' SHLIB_LD='$(SHLIB_CXX17LD)' SHLIB='filee2c3224993c.so' OBJECTS='filee2c3224993c.o'
make would use
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/src/" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include/" -I"/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include '/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/include/stan/math/prim/fun/Eigen.hpp' -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1 -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c filee2c3224993c.cpp -o filee2c3224993c.o
if test "zfilee2c3224993c.o" != "z"; then \
echo clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L"/Library/Frameworks/R.framework/Resources/lib" -L/opt/R/arm64/lib -o filee2c3224993c.so filee2c3224993c.o '/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rstan/lib//libStanServices.a' -L'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/lib/' -lStanHeaders -L'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/lib/' -ltbb -L/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R ; \
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L"/Library/Frameworks/R.framework/Resources/lib" -L/opt/R/arm64/lib -o filee2c3224993c.so filee2c3224993c.o '/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/rstan/lib//libStanServices.a' -L'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/StanHeaders/lib/' -lStanHeaders -L'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/lib/' -ltbb -L/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R ; \
fi
Quitting from hmetad.Rmd:127-138 [model_fitting]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `sink()`:
! invalid connection
---
Backtrace:
▆
1. └─hmetad::fit_metad(...)
2. └─brms::brm(formula, data.aggregated, stanvars = sv, ...)
3. └─brms::do_call(compile_model, compile_args)
4. └─brms:::eval2(call, envir = args, enclos = envir)
5. └─base::eval(expr, envir, ...)
6. └─base::eval(expr, envir, ...)
7. └─brms (local) .fun(...)
8. └─brms (local) .compile_model(model, ...)
9. ├─brms:::eval_silent(...)
10. │ └─base::eval(expr, envir)
11. │ └─base::eval(expr, envir)
12. └─brms::do_call(rstan::stan_model, args)
13. └─brms:::eval2(call, envir = args, enclos = envir)
14. └─base::eval(expr, envir, ...)
15. └─base::eval(expr, envir, ...)
16. └─rstan (local) .fun(model_code = .x1)
17. └─rstan:::cxxfunctionplus(...)
18. └─base::sink(type = "output")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'hmetad.Rmd' failed with diagnostics:
invalid connection
--- failed re-building ‘hmetad.Rmd’
--- re-building ‘parameterization.Rmd’ using rmarkdown
--- finished re-building ‘parameterization.Rmd’
SUMMARY: processing the following files failed:
‘alternative_distributions.Rmd’ ‘hmetad.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-macos-arm64