Last updated on 2024-09-26 14:48:25 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.8.0 | 38.23 | 353.93 | 392.16 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.8.0 | 22.94 | 224.45 | 247.39 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.8.0 | 554.92 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.8.0 | 516.54 | ERROR | |||
| r-devel-windows-x86_64 | 1.8.0 | 36.00 | 320.00 | 356.00 | OK | |
| r-patched-linux-x86_64 | 1.8.0 | 37.84 | 324.57 | 362.41 | OK | |
| r-release-linux-x86_64 | 1.8.0 | 34.71 | 324.04 | 358.75 | OK | |
| r-release-macos-arm64 | 1.8.0 | 141.00 | OK | |||
| r-release-macos-x86_64 | 1.8.0 | 310.00 | OK | |||
| r-release-windows-x86_64 | 1.8.0 | 38.00 | 322.00 | 360.00 | OK | |
| r-oldrel-macos-arm64 | 1.8.0 | 148.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.8.0 | 351.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.8.0 | 47.00 | 448.00 | 495.00 | OK |
Version: 1.8.0
Check: examples
Result: ERROR
Running examples in ‘lava-Ex.R’ failed
The error most likely occurred in:
> ### Name: Missing
> ### Title: Missing value generator
> ### Aliases: Missing Missing, Missing<-
>
> ### ** Examples
>
> library(lava)
> set.seed(17)
> m <- lvm(y0~x01+x02+x03)
> m <- Missing(m,formula=x1~x01,Rformula=R1~0.3*x02+-0.7*x01,p=0.4)
> sim(m,10)
y0 x01 x02 x03 R1 x1
1 -0.3307614 1.18078924 0.6810276 -1.17756957 0 NA
2 -1.0786445 0.64319207 -0.6820334 -0.96016651 0 NA
3 -0.5398741 1.29532187 -0.7232567 -0.87895224 0 NA
4 -2.5119604 0.18791807 1.6735260 -3.55613648 1 0.1879181
5 0.3507905 1.59120510 -0.5957556 -1.41674984 0 NA
6 0.4902836 -0.05517906 1.1598438 -0.44876927 0 NA
7 1.1528003 0.83847112 0.1174224 -0.77596771 1 0.8384711
8 1.3032974 0.15937013 0.2592214 -0.83182805 0 NA
9 1.3153836 0.62595440 0.3823621 0.05183012 1 0.6259544
10 -0.3278672 0.63358473 -0.7114817 -0.61655131 0 NA
>
>
> m <- lvm(y~1)
Error in cbind(idxM, pidxM) : cannot get data pointer of 'NULL' objects
Calls: lvm ... intercept<- -> intercept<-.lvm -> reindex -> mat.lvm -> cbind
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.8.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [38s/47s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> #library("lava")
> suppressPackageStartupMessages(library("testthat"))
> test_check("lava")
Loading required package: lava
Attaching package: 'lava'
The following object is masked from 'package:testthat':
compare
0: 13.081250: 0.200620 0.00000 0.337259
1: 7.9524457: 0.272131 0.575626 1.15184
2: 7.4635337: 0.132261 0.763214 0.929738
3: 7.0359771: 0.0594089 0.733914 0.616824
4: 6.9865362: 0.0794124 0.756603 0.558204
5: 6.9757752: 0.0833126 0.759329 0.492413
6: 6.9738107: 0.0806668 0.756413 0.513241
7: 6.9737419: 0.0827969 0.758414 0.510545
8: 6.9737365: 0.0806693 0.757663 0.508982
9: 6.9737257: 0.0819960 0.757150 0.509933
10: 6.9737242: 0.0817930 0.757623 0.509977
11: 6.9737241: 0.0816735 0.757610 0.509971
12: 6.9737241: 0.0816798 0.757610 0.509973
[ FAIL 16 | WARN 0 | SKIP 0 | PASS 173 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-constrain.R:51:5'): Non-linear in exogenous variables ──────────
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. └─lava::lvm(y[m] ~ 1) at test-constrain.R:51:5
2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar)
3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar)
4. └─lava::procformula(object, value, ...)
5. ├─lava::`intercept<-`(`*tmp*`, ys, value = char2num(xs[intpos[1]]))
6. └─lava:::`intercept<-.lvm`(`*tmp*`, ys, value = char2num(xs[intpos[1]]))
7. └─lava::reindex(object)
8. └─lava:::mat.lvm(x, res)
9. └─base::cbind(idxM, pidxM)
── Error ('test-constrain.R:66:5'): Probit constraints ─────────────────────────
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. ├─lava::`ordinal<-`(...) at test-constrain.R:66:5
2. └─lava:::`ordinal<-.lvm`(...)
3. ├─lava::ordinal(x, value, ...)
4. └─lava:::ordinal.lvm(x, value, ...)
5. ├─lava::`intfix<-`(`*tmp*`, var[i], NULL, value = 0)
6. └─lava:::`intfix<-.lvm`(`*tmp*`, var[i], NULL, value = 0)
7. ├─lava::`intercept<-`(`*tmp*`, ..., value = value)
8. └─lava:::`intercept<-.lvm`(`*tmp*`, ..., value = value)
9. └─lava::reindex(object)
10. └─lava:::mat.lvm(x, res)
11. └─base::cbind(idxM, pidxM)
── Error ('test-constrain.R:92:3'): Multiple group constraints II ──────────────
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. └─lava::lvm(~bw.1 + bw.2) at test-constrain.R:92:3
2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar)
3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar)
4. └─lava::procformula(object, value, ...)
5. ├─lava::`exogenous<-`(...)
6. └─lava:::`exogenous<-.lvm`(...)
7. └─lava::reindex(x)
8. └─lava:::mat.lvm(x, res)
9. └─base::cbind(idxM, pidxM)
── Error ('test-inference.R:47:5'): IV-estimator ───────────────────────────────
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. ├─lava::estimate(m, d, estimator = "iv") at test-inference.R:47:5
2. └─lava:::estimate.lvm(m, d, estimator = "iv")
3. ├─base::do.call(...)
4. └─lava:::IV_objective.lvm(x = `<lvm>`, data = `<df[,4]>`, control = `<list>`)
5. └─lava:::IV2(x, data, ...)
6. ├─lava::parfix(m, idx, p)
7. └─lava:::parfix.lvm(m, idx, p)
8. └─lava::reindex(object)
9. └─lava:::mat.lvm(x, res)
10. └─base::cbind(idxM, pidxM)
── Error ('test-inference.R:118:5'): modelsearch and GoF ───────────────────────
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. ├─lava::estimate(lvm(c(y1, y2) ~ 1, y1 ~ x), d) at test-inference.R:118:5
2. └─lava::lvm(c(y1, y2) ~ 1, y1 ~ x)
3. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar)
4. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar)
5. └─lava::procformula(object, value, ...)
6. ├─lava::`intercept<-`(`*tmp*`, ys, value = char2num(xs[intpos[1]]))
7. └─lava:::`intercept<-.lvm`(`*tmp*`, ys, value = char2num(xs[intpos[1]]))
8. └─lava::reindex(object)
9. └─lava:::mat.lvm(x, res)
10. └─base::cbind(idxM, pidxM)
── Error ('test-inference.R:255:5'): Prediction with missing data, random intercept ──
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. └─lava::lvm(c(y1, y2, y3) ~ u[0]) at test-inference.R:255:5
2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar)
3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar)
4. └─lava::procformula(object, value, ...)
5. ├─lava::`intercept<-`(...)
6. └─lava:::`intercept<-.lvm`(...)
7. └─lava::reindex(object)
8. └─lava:::mat.lvm(x, res)
9. └─base::cbind(idxM, pidxM)
── Error ('test-inference.R:323:5'): Random slope model ────────────────────────
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. └─lava::lvm(c(y1[0:v], y2[0:v], y3[0:v]) ~ 1 * u) at test-inference.R:323:5
2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar)
3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar)
4. └─lava::procformula(object, value, ...)
5. ├─lava::`intercept<-`(...)
6. └─lava:::`intercept<-.lvm`(...)
7. └─lava::reindex(object)
8. └─lava:::mat.lvm(x, res)
9. └─base::cbind(idxM, pidxM)
── Error ('test-model.R:4:5'): Basic model building blocks ─────────────────────
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. └─lava::lvm(y[m] ~ x) at test-model.R:4:5
2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar)
3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar)
4. └─lava::procformula(object, value, ...)
5. ├─lava::`intercept<-`(...)
6. └─lava:::`intercept<-.lvm`(...)
7. └─lava::reindex(object)
8. └─lava:::mat.lvm(x, res)
9. └─base::cbind(idxM, pidxM)
── Error ('test-model.R:88:5'): Graph attributes ───────────────────────────────
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. └─lava::graph2lvm(g1) at test-model.R:88:5
2. └─lava::lvm(graph::nodes(g), debug = debug, messages = messages)
3. ├─lava::addvar(res, myvar, messages = messages)
4. └─lava:::addvar.lvm(res, myvar, messages = messages)
5. └─lava::reindex(x)
6. └─lava:::mat.lvm(x, res)
7. └─base::cbind(idxM, pidxM)
── Error ('test-model.R:119:5'): Categorical variables ─────────────────────────
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. └─lava::`categorical<-`(`*tmp*`, K = 3, p = c(0.1, 0.5), value = `<formula>`) at test-model.R:119:5
2. └─lava::categorical(x, value, ...)
3. ├─lava::`ordinal<-`(...)
4. └─lava:::`ordinal<-.lvm`(...)
5. ├─lava::ordinal(x, value, ...)
6. └─lava:::ordinal.lvm(x, value, ...)
7. ├─lava::`addvar<-`(`*tmp*`, value = var)
8. └─lava:::`addvar<-.lvm`(`*tmp*`, value = var)
9. ├─lava::addvar(x, var = value, ...)
10. └─lava:::addvar.lvm(x, var = value, ...)
11. └─lava::reindex(x)
12. └─lava:::mat.lvm(x, res)
13. └─base::cbind(idxM, pidxM)
── Error ('test-multigroup.R:31:3'): Missing data analysis ─────────────────────
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. ├─lava::estimate(m, d, missing = TRUE) at test-multigroup.R:31:3
2. └─lava:::estimate.lvm(m, d, missing = TRUE)
3. └─lava:::estimate.MAR(...)
4. ├─base::subset(Model(x), exogenous(x))
5. └─lava:::subset.lvm(Model(x), exogenous(x))
6. └─lava::lvm(vars)
7. ├─lava::addvar(res, myvar, messages = messages)
8. └─lava:::addvar.lvm(res, myvar, messages = messages)
9. └─lava::reindex(x)
10. └─lava:::mat.lvm(x, res)
11. └─base::cbind(idxM, pidxM)
── Error ('test-multigroup.R:80:5'): Multiple group, constraints ───────────────
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. └─lava::lvm(y[m:v] ~ 1) at test-multigroup.R:80:5
2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar)
3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar)
4. └─lava::procformula(object, value, ...)
5. ├─lava::`intercept<-`(`*tmp*`, ys, value = char2num(xs[intpos[1]]))
6. └─lava:::`intercept<-.lvm`(`*tmp*`, ys, value = char2num(xs[intpos[1]]))
7. └─lava::reindex(object)
8. └─lava:::mat.lvm(x, res)
9. └─base::cbind(idxM, pidxM)
── Error ('test-sim.R:4:5'): Constrain, transform I ────────────────────────────
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. └─lava::lvm(, ~y + x) at test-sim.R:4:5
2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar)
3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar)
4. └─lava::procformula(object, value, ...)
5. ├─lava::`exogenous<-`(...)
6. └─lava:::`exogenous<-.lvm`(...)
7. └─lava::reindex(x)
8. └─lava:::mat.lvm(x, res)
9. └─base::cbind(idxM, pidxM)
── Error ('test-sim.R:22:5'): Missing ──────────────────────────────────────────
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. └─lava::lvm(y ~ 1) at test-sim.R:22:5
2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar)
3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar)
4. └─lava::procformula(object, value, ...)
5. ├─lava::`intercept<-`(`*tmp*`, ys, value = char2num(xs[intpos[1]]))
6. └─lava:::`intercept<-.lvm`(`*tmp*`, ys, value = char2num(xs[intpos[1]]))
7. └─lava::reindex(object)
8. └─lava:::mat.lvm(x, res)
9. └─base::cbind(idxM, pidxM)
── Error ('test-sim.R:107:5'): distributions ───────────────────────────────────
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. ├─lava::`distribution<-`(`*tmp*`, ~y, TRUE, value = `<fn>`) at test-sim.R:107:5
2. └─lava:::`distribution<-.lvm`(`*tmp*`, ~y, TRUE, value = `<fn>`)
3. ├─lava::`distribution<-`(`*tmp*`, variable, mdist = TRUE, value = list(gen))
4. └─lava:::`distribution<-.lvm`(...)
5. ├─lava::`addvar<-`(`*tmp*`, value = variable)
6. └─lava:::`addvar<-.lvm`(`*tmp*`, value = variable)
7. ├─lava::addvar(x, var = value, ...)
8. └─lava:::addvar.lvm(x, var = value, ...)
9. └─lava::reindex(x)
10. └─lava:::mat.lvm(x, res)
11. └─base::cbind(idxM, pidxM)
── Error ('test-sim.R:176:5'): eventTime ───────────────────────────────────────
Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects
Backtrace:
▆
1. └─lava::lvm(y ~ 1) at test-sim.R:176:5
2. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar)
3. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar)
4. └─lava::procformula(object, value, ...)
5. ├─lava::`intercept<-`(`*tmp*`, ys, value = char2num(xs[intpos[1]]))
6. └─lava:::`intercept<-.lvm`(`*tmp*`, ys, value = char2num(xs[intpos[1]]))
7. └─lava::reindex(object)
8. └─lava:::mat.lvm(x, res)
9. └─base::cbind(idxM, pidxM)
[ FAIL 16 | WARN 0 | SKIP 0 | PASS 173 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc