Last updated on 2025-01-15 02:49:50 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 127.96 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 70.13 | ERROR | |||
| r-release-macos-arm64 | 1.0.0 | 36.00 | ERROR | |||
| r-release-macos-x86_64 | 1.0.0 | 62.00 | ERROR | |||
| r-oldrel-macos-arm64 | 1.0.0 | 32.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.0.0 | 64.00 | ERROR |
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [72s/93s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(pam)
>
> test_check("pam")
file: 20231123_03.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231123_04.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231123_06.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231214.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231214_11.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_14.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_15.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_10.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231123_03.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231123_04.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231123_06.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231214.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231214_11.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_14.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_15.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_10.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
[ FAIL 51 | WARN 16 | SKIP 0 | PASS 149 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-platt_etr_I.R:10:5'): test-platt_etr_I generate regression 20240925.csv ──
model_result[["alpha"]] (`actual`) not equal to 0.35079243 (`expected`).
`actual`: 0.350792437
`expected`: 0.350792430
── Failure ('test-platt_etr_I.R:11:5'): test-platt_etr_I generate regression 20240925.csv ──
model_result[["beta"]] (`actual`) not equal to 0.05625881 (`expected`).
`actual`: 0.056258772
`expected`: 0.056258810
── Failure ('test-platt_etr_I.R:12:5'): test-platt_etr_I generate regression 20240925.csv ──
model_result[["ps"]] (`actual`) not equal to 242.02871 (`expected`).
`actual`: 242.028655
`expected`: 242.028710
── Failure ('test-platt_etr_I.R:14:5'): test-platt_etr_I generate regression 20240925.csv ──
model_result[["ik"]] (`actual`) not equal to 432.8934096 (`expected`).
`actual`: 432.8934027
`expected`: 432.8934096
── Failure ('test-platt_etr_I.R:15:5'): test-platt_etr_I generate regression 20240925.csv ──
model_result[["is"]] (`actual`) not equal to 689.94849 (`expected`).
`actual`: 689.94833
`expected`: 689.94849
── Failure ('test-platt_etr_I.R:16:5'): test-platt_etr_I generate regression 20240925.csv ──
model_result[["ib"]] (`actual`) not equal to 4302.05878 (`expected`).
`actual`: 4302.0607
`expected`: 4302.0588
── Failure ('test-platt_etr_I.R:17:5'): test-platt_etr_I generate regression 20240925.csv ──
model_result[["im"]] (`actual`) not equal to 1365.3918 (`expected`).
`actual`: 1365.391883
`expected`: 1365.391800
── Failure ('test-platt_etr_I.R:44:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["a"]] (`actual`) not equal to 242.02871 (`expected`).
`actual`: 242.028655
`expected`: 242.028710
── Failure ('test-platt_etr_I.R:45:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["b"]] (`actual`) not equal to 0.35079243 (`expected`).
`actual`: 0.350792437
`expected`: 0.350792430
── Failure ('test-platt_etr_I.R:46:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["c"]] (`actual`) not equal to 0.05625881 (`expected`).
`actual`: 0.056258772
`expected`: 0.056258810
── Failure ('test-platt_etr_I.R:48:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["alpha"]] (`actual`) not equal to 0.35079243 (`expected`).
`actual`: 0.350792437
`expected`: 0.350792430
── Failure ('test-platt_etr_I.R:49:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["beta"]] (`actual`) not equal to 0.05625881 (`expected`).
`actual`: 0.056258772
`expected`: 0.056258810
── Failure ('test-platt_etr_I.R:51:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["etrmax_without_photoinhibition"]] (`actual`) not equal to 242.02871 (`expected`).
`actual`: 242.028655
`expected`: 242.028710
── Failure ('test-platt_etr_I.R:52:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["ik_with_photoinhibition"]] (`actual`) not equal to 432.8934096 (`expected`).
`actual`: 432.8934027
`expected`: 432.8934096
── Failure ('test-platt_etr_I.R:53:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["ik_without_photoinhibition"]] (`actual`) not equal to 689.94849 (`expected`).
`actual`: 689.94833
`expected`: 689.94849
── Failure ('test-platt_etr_I.R:54:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["im_with_photoinhibition"]] (`actual`) not equal to 1365.3918 (`expected`).
`actual`: 1365.391883
`expected`: 1365.391800
── Failure ('test-platt_etr_I.R:56:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["ib"]] (`actual`) not equal to 4302.05878 (`expected`).
`actual`: 4302.0607
`expected`: 4302.0588
── Failure ('test-platt_etr_I.R:57:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["etrmax_with_without_ratio"]] (`actual`) not equal to 1.593806867 (`expected`).
`actual`: 1.59380652
`expected`: 1.59380687
── Failure ('test-vollenweider_etr_I.R:9:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
model_result[["sdiff"]] (`actual`) not equal to 57.4445851 (`expected`).
`actual`: 57.444548
`expected`: 57.444585
── Failure ('test-vollenweider_etr_I.R:10:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
model_result[["pmax"]] (`actual`) not equal to 165.46686 (`expected`).
`actual`: 165.466889
`expected`: 165.466860
── Failure ('test-vollenweider_etr_I.R:13:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
model_result[["n"]] (`actual`) not equal to 34.8365884 (`expected`).
`actual`: 37.6
`expected`: 34.8
── Failure ('test-vollenweider_etr_I.R:14:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
model_result[["ik"]] (`actual`) not equal to 536.24749 (`expected`).
`actual`: 536.24763
`expected`: 536.24749
── Failure ('test-vollenweider_etr_I.R:15:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
model_result[["popt"]] (`actual`) not equal to 153.09957 (`expected`).
`actual`: 153.09935
`expected`: 153.09957
── Failure ('test-vollenweider_etr_I.R:16:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
model_result[["iik"]] (`actual`) not equal to 496.16738 (`expected`).
`actual`: 496.16673
`expected`: 496.16738
── Failure ('test-vollenweider_etr_I.R:17:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
model_result[["pmax_popt_and_ik_iik_ratio"]] (`actual`) not equal to 1.08077941 (`expected`).
`actual`: 1.0807811
`expected`: 1.0807794
── Failure ('test-vollenweider_etr_I.R:60:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["sdiff"]] (`actual`) not equal to 57.4445851 (`expected`).
`actual`: 57.444548
`expected`: 57.444585
── Failure ('test-vollenweider_etr_I.R:61:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["a"]] (`actual`) not equal to 165.46686 (`expected`).
`actual`: 165.466889
`expected`: 165.466860
── Failure ('test-vollenweider_etr_I.R:64:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["d"]] (`actual`) not equal to 34.8365884 (`expected`).
`actual`: 37.6
`expected`: 34.8
── Failure ('test-vollenweider_etr_I.R:65:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["alpha"]] (`actual`) not equal to 0.30856436 (`expected`).
`actual`: 0.308564323
`expected`: 0.308564360
── Failure ('test-vollenweider_etr_I.R:67:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["etrmax_with_photoinhibition"]] (`actual`) not equal to 153.09957 (`expected`).
`actual`: 153.09935
`expected`: 153.09957
── Failure ('test-vollenweider_etr_I.R:68:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["etrmax_without_photoinhibition"]] (`actual`) not equal to 165.46686 (`expected`).
`actual`: 165.466889
`expected`: 165.466860
── Failure ('test-vollenweider_etr_I.R:69:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["ik_with_photoinhibition"]] (`actual`) not equal to 496.16738 (`expected`).
`actual`: 496.16673
`expected`: 496.16738
── Failure ('test-vollenweider_etr_I.R:70:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["ik_without_photoinhibition"]] (`actual`) not equal to 536.24749 (`expected`).
`actual`: 536.24763
`expected`: 536.24749
── Failure ('test-vollenweider_etr_I.R:74:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["etrmax_with_without_ratio"]] (`actual`) not equal to 1.08077941 (`expected`).
`actual`: 1.0807811
`expected`: 1.0807794
── Failure ('test-vollenweider_etr_II.R:9:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
model_result[["sdiff"]] (`actual`) not equal to 2.5104818 (`expected`).
`actual`: 2.480
`expected`: 2.510
── Failure ('test-vollenweider_etr_II.R:10:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
model_result[["pmax"]] (`actual`) not equal to 53.404027 (`expected`).
`actual`: 53.458
`expected`: 53.404
── Failure ('test-vollenweider_etr_II.R:13:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
model_result[["n"]] (`actual`) not equal to 2.34641 (`expected`).
`actual`: 2.19
`expected`: 2.35
── Failure ('test-vollenweider_etr_II.R:14:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
model_result[["ik"]] (`actual`) not equal to 351.3752 (`expected`).
`actual`: 351.82
`expected`: 351.38
── Failure ('test-vollenweider_etr_II.R:15:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
model_result[["popt"]] (`actual`) not equal to 44.16714 (`expected`).
`actual`: 44.1710
`expected`: 44.1671
── Failure ('test-vollenweider_etr_II.R:16:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
model_result[["iik"]] (`actual`) not equal to 290.60051 (`expected`).
`actual`: 290.71
`expected`: 290.60
── Failure ('test-vollenweider_etr_II.R:17:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
model_result[["pmax_popt_and_ik_iik_ratio"]] (`actual`) not equal to 1.209134835 (`expected`).
`actual`: 1.2102
`expected`: 1.2091
── Failure ('test-vollenweider_etr_II.R:60:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["sdiff"]] (`actual`) not equal to 2.5104818 (`expected`).
`actual`: 2.480
`expected`: 2.510
── Failure ('test-vollenweider_etr_II.R:61:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["a"]] (`actual`) not equal to 53.404027 (`expected`).
`actual`: 53.458
`expected`: 53.404
── Failure ('test-vollenweider_etr_II.R:64:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["d"]] (`actual`) not equal to 2.34641 (`expected`).
`actual`: 2.19
`expected`: 2.35
── Failure ('test-vollenweider_etr_II.R:65:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["alpha"]] (`actual`) not equal to 0.15198576 (`expected`).
`actual`: 0.151944
`expected`: 0.151986
── Failure ('test-vollenweider_etr_II.R:67:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["etrmax_with_photoinhibition"]] (`actual`) not equal to 44.16714 (`expected`).
`actual`: 44.1710
`expected`: 44.1671
── Failure ('test-vollenweider_etr_II.R:68:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["etrmax_without_photoinhibition"]] (`actual`) not equal to 53.404027 (`expected`).
`actual`: 53.458
`expected`: 53.404
── Failure ('test-vollenweider_etr_II.R:69:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["ik_with_photoinhibition"]] (`actual`) not equal to 290.60051 (`expected`).
`actual`: 290.71
`expected`: 290.60
── Failure ('test-vollenweider_etr_II.R:70:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["ik_without_photoinhibition"]] (`actual`) not equal to 351.3752 (`expected`).
`actual`: 351.82
`expected`: 351.38
── Failure ('test-vollenweider_etr_II.R:71:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["im_with_photoinhibition"]] (`actual`) not equal to 757 (`expected`).
`actual`: 756.0
`expected`: 757.0
── Failure ('test-vollenweider_etr_II.R:74:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["etrmax_with_without_ratio"]] (`actual`) not equal to 1.209134835 (`expected`).
`actual`: 1.2102
`expected`: 1.2091
[ FAIL 51 | WARN 16 | SKIP 0 | PASS 149 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [35s/36s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(pam)
>
> test_check("pam")
file: 20231123_03.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231123_04.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231123_06.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231214.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231214_11.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_14.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_15.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_10.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231123_03.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231123_04.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231123_06.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231214.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231214_11.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_14.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_15.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_10.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
[ FAIL 51 | WARN 16 | SKIP 0 | PASS 149 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-platt_etr_I.R:10:5'): test-platt_etr_I generate regression 20240925.csv ──
model_result[["alpha"]] (`actual`) not equal to 0.35079243 (`expected`).
`actual`: 0.350792437
`expected`: 0.350792430
── Failure ('test-platt_etr_I.R:11:5'): test-platt_etr_I generate regression 20240925.csv ──
model_result[["beta"]] (`actual`) not equal to 0.05625881 (`expected`).
`actual`: 0.056258772
`expected`: 0.056258810
── Failure ('test-platt_etr_I.R:12:5'): test-platt_etr_I generate regression 20240925.csv ──
model_result[["ps"]] (`actual`) not equal to 242.02871 (`expected`).
`actual`: 242.028655
`expected`: 242.028710
── Failure ('test-platt_etr_I.R:14:5'): test-platt_etr_I generate regression 20240925.csv ──
model_result[["ik"]] (`actual`) not equal to 432.8934096 (`expected`).
`actual`: 432.8934027
`expected`: 432.8934096
── Failure ('test-platt_etr_I.R:15:5'): test-platt_etr_I generate regression 20240925.csv ──
model_result[["is"]] (`actual`) not equal to 689.94849 (`expected`).
`actual`: 689.94833
`expected`: 689.94849
── Failure ('test-platt_etr_I.R:16:5'): test-platt_etr_I generate regression 20240925.csv ──
model_result[["ib"]] (`actual`) not equal to 4302.05878 (`expected`).
`actual`: 4302.0607
`expected`: 4302.0588
── Failure ('test-platt_etr_I.R:17:5'): test-platt_etr_I generate regression 20240925.csv ──
model_result[["im"]] (`actual`) not equal to 1365.3918 (`expected`).
`actual`: 1365.391883
`expected`: 1365.391800
── Failure ('test-platt_etr_I.R:44:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["a"]] (`actual`) not equal to 242.02871 (`expected`).
`actual`: 242.028655
`expected`: 242.028710
── Failure ('test-platt_etr_I.R:45:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["b"]] (`actual`) not equal to 0.35079243 (`expected`).
`actual`: 0.350792437
`expected`: 0.350792430
── Failure ('test-platt_etr_I.R:46:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["c"]] (`actual`) not equal to 0.05625881 (`expected`).
`actual`: 0.056258772
`expected`: 0.056258810
── Failure ('test-platt_etr_I.R:48:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["alpha"]] (`actual`) not equal to 0.35079243 (`expected`).
`actual`: 0.350792437
`expected`: 0.350792430
── Failure ('test-platt_etr_I.R:49:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["beta"]] (`actual`) not equal to 0.05625881 (`expected`).
`actual`: 0.056258772
`expected`: 0.056258810
── Failure ('test-platt_etr_I.R:51:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["etrmax_without_photoinhibition"]] (`actual`) not equal to 242.02871 (`expected`).
`actual`: 242.028655
`expected`: 242.028710
── Failure ('test-platt_etr_I.R:52:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["ik_with_photoinhibition"]] (`actual`) not equal to 432.8934096 (`expected`).
`actual`: 432.8934027
`expected`: 432.8934096
── Failure ('test-platt_etr_I.R:53:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["ik_without_photoinhibition"]] (`actual`) not equal to 689.94849 (`expected`).
`actual`: 689.94833
`expected`: 689.94849
── Failure ('test-platt_etr_I.R:54:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["im_with_photoinhibition"]] (`actual`) not equal to 1365.3918 (`expected`).
`actual`: 1365.391883
`expected`: 1365.391800
── Failure ('test-platt_etr_I.R:56:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["ib"]] (`actual`) not equal to 4302.05878 (`expected`).
`actual`: 4302.0607
`expected`: 4302.0588
── Failure ('test-platt_etr_I.R:57:5'): test-platt_etr_I generate regression modified 20240925.csv ──
model_result[["etrmax_with_without_ratio"]] (`actual`) not equal to 1.593806867 (`expected`).
`actual`: 1.59380652
`expected`: 1.59380687
── Failure ('test-vollenweider_etr_I.R:9:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
model_result[["sdiff"]] (`actual`) not equal to 57.4445851 (`expected`).
`actual`: 57.444548
`expected`: 57.444585
── Failure ('test-vollenweider_etr_I.R:10:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
model_result[["pmax"]] (`actual`) not equal to 165.46686 (`expected`).
`actual`: 165.466889
`expected`: 165.466860
── Failure ('test-vollenweider_etr_I.R:13:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
model_result[["n"]] (`actual`) not equal to 34.8365884 (`expected`).
`actual`: 37.6
`expected`: 34.8
── Failure ('test-vollenweider_etr_I.R:14:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
model_result[["ik"]] (`actual`) not equal to 536.24749 (`expected`).
`actual`: 536.24763
`expected`: 536.24749
── Failure ('test-vollenweider_etr_I.R:15:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
model_result[["popt"]] (`actual`) not equal to 153.09957 (`expected`).
`actual`: 153.09935
`expected`: 153.09957
── Failure ('test-vollenweider_etr_I.R:16:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
model_result[["iik"]] (`actual`) not equal to 496.16738 (`expected`).
`actual`: 496.16673
`expected`: 496.16738
── Failure ('test-vollenweider_etr_I.R:17:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
model_result[["pmax_popt_and_ik_iik_ratio"]] (`actual`) not equal to 1.08077941 (`expected`).
`actual`: 1.0807811
`expected`: 1.0807794
── Failure ('test-vollenweider_etr_I.R:60:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["sdiff"]] (`actual`) not equal to 57.4445851 (`expected`).
`actual`: 57.444548
`expected`: 57.444585
── Failure ('test-vollenweider_etr_I.R:61:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["a"]] (`actual`) not equal to 165.46686 (`expected`).
`actual`: 165.466889
`expected`: 165.466860
── Failure ('test-vollenweider_etr_I.R:64:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["d"]] (`actual`) not equal to 34.8365884 (`expected`).
`actual`: 37.6
`expected`: 34.8
── Failure ('test-vollenweider_etr_I.R:65:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["alpha"]] (`actual`) not equal to 0.30856436 (`expected`).
`actual`: 0.308564323
`expected`: 0.308564360
── Failure ('test-vollenweider_etr_I.R:67:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["etrmax_with_photoinhibition"]] (`actual`) not equal to 153.09957 (`expected`).
`actual`: 153.09935
`expected`: 153.09957
── Failure ('test-vollenweider_etr_I.R:68:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["etrmax_without_photoinhibition"]] (`actual`) not equal to 165.46686 (`expected`).
`actual`: 165.466889
`expected`: 165.466860
── Failure ('test-vollenweider_etr_I.R:69:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["ik_with_photoinhibition"]] (`actual`) not equal to 496.16738 (`expected`).
`actual`: 496.16673
`expected`: 496.16738
── Failure ('test-vollenweider_etr_I.R:70:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["ik_without_photoinhibition"]] (`actual`) not equal to 536.24749 (`expected`).
`actual`: 536.24763
`expected`: 536.24749
── Failure ('test-vollenweider_etr_I.R:74:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
model_result[["etrmax_with_without_ratio"]] (`actual`) not equal to 1.08077941 (`expected`).
`actual`: 1.0807811
`expected`: 1.0807794
── Failure ('test-vollenweider_etr_II.R:9:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
model_result[["sdiff"]] (`actual`) not equal to 2.5104818 (`expected`).
`actual`: 2.480
`expected`: 2.510
── Failure ('test-vollenweider_etr_II.R:10:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
model_result[["pmax"]] (`actual`) not equal to 53.404027 (`expected`).
`actual`: 53.458
`expected`: 53.404
── Failure ('test-vollenweider_etr_II.R:13:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
model_result[["n"]] (`actual`) not equal to 2.34641 (`expected`).
`actual`: 2.19
`expected`: 2.35
── Failure ('test-vollenweider_etr_II.R:14:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
model_result[["ik"]] (`actual`) not equal to 351.3752 (`expected`).
`actual`: 351.82
`expected`: 351.38
── Failure ('test-vollenweider_etr_II.R:15:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
model_result[["popt"]] (`actual`) not equal to 44.16714 (`expected`).
`actual`: 44.1710
`expected`: 44.1671
── Failure ('test-vollenweider_etr_II.R:16:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
model_result[["iik"]] (`actual`) not equal to 290.60051 (`expected`).
`actual`: 290.71
`expected`: 290.60
── Failure ('test-vollenweider_etr_II.R:17:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
model_result[["pmax_popt_and_ik_iik_ratio"]] (`actual`) not equal to 1.209134835 (`expected`).
`actual`: 1.2102
`expected`: 1.2091
── Failure ('test-vollenweider_etr_II.R:60:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["sdiff"]] (`actual`) not equal to 2.5104818 (`expected`).
`actual`: 2.480
`expected`: 2.510
── Failure ('test-vollenweider_etr_II.R:61:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["a"]] (`actual`) not equal to 53.404027 (`expected`).
`actual`: 53.458
`expected`: 53.404
── Failure ('test-vollenweider_etr_II.R:64:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["d"]] (`actual`) not equal to 2.34641 (`expected`).
`actual`: 2.19
`expected`: 2.35
── Failure ('test-vollenweider_etr_II.R:65:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["alpha"]] (`actual`) not equal to 0.15198576 (`expected`).
`actual`: 0.151944
`expected`: 0.151986
── Failure ('test-vollenweider_etr_II.R:67:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["etrmax_with_photoinhibition"]] (`actual`) not equal to 44.16714 (`expected`).
`actual`: 44.1710
`expected`: 44.1671
── Failure ('test-vollenweider_etr_II.R:68:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["etrmax_without_photoinhibition"]] (`actual`) not equal to 53.404027 (`expected`).
`actual`: 53.458
`expected`: 53.404
── Failure ('test-vollenweider_etr_II.R:69:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["ik_with_photoinhibition"]] (`actual`) not equal to 290.60051 (`expected`).
`actual`: 290.71
`expected`: 290.60
── Failure ('test-vollenweider_etr_II.R:70:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["ik_without_photoinhibition"]] (`actual`) not equal to 351.3752 (`expected`).
`actual`: 351.82
`expected`: 351.38
── Failure ('test-vollenweider_etr_II.R:71:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["im_with_photoinhibition"]] (`actual`) not equal to 757 (`expected`).
`actual`: 756.0
`expected`: 757.0
── Failure ('test-vollenweider_etr_II.R:74:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
model_result[["etrmax_with_without_ratio"]] (`actual`) not equal to 1.209134835 (`expected`).
`actual`: 1.2102
`expected`: 1.2091
[ FAIL 51 | WARN 16 | SKIP 0 | PASS 149 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [10s/11s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(pam)
>
> test_check("pam")
file: 20231123_03.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231123_04.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231123_06.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231214.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231214_11.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_14.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_15.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_10.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
[ FAIL 19 | WARN 10 | SKIP 0 | PASS 20 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-compare_regression_models_etr_I.R:25:5'): compare_regression_models etr I ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-compare_regression_models_etr_II.R:25:5'): compare_regression_models etr II ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-compare_regression_models_total.R:34:5'): compare_regression_models etr I + II ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-eilers_peeters_etr_I.R:29:5'): test-eilers_peeters_etr_I generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-eilers_peeters_etr_I.R:95:5'): test-eilers_peeters_etr_I generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-eilers_peeters_etr_II.R:29:5'): test-eilers_peeters_etr_II generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-eilers_peeters_etr_II.R:78:5'): test-eilers_peeters_etr_II modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-platt_etr_I.R:29:5'): test-platt_etr_I generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-platt_etr_I.R:75:5'): test-platt_etr_I generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-platt_etr_II.R:29:5'): test-platt_etr_II generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-platt_etr_II.R:92:5'): test-platt_etr_II generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-vollenweider_etr_I.R:29:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-vollenweider_etr_I.R:92:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-vollenweider_etr_II.R:29:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-vollenweider_etr_II.R:92:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-walsby_etr_I.R:19:5'): test-walsby_etr_I generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-walsby_etr_I.R:82:5'): test-walsby_etr_I generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-walsby_etr_II.R:19:5'): test-walsby_etr_II generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-walsby_etr_II.R:82:5'): test-walsby_etr_II generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
[ FAIL 19 | WARN 10 | SKIP 0 | PASS 20 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [17s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(pam)
>
> test_check("pam")
file: 20231123_03.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231123_04.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231123_06.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231214.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231214_11.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_14.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_15.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_10.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
[ FAIL 19 | WARN 10 | SKIP 0 | PASS 20 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-compare_regression_models_etr_I.R:25:5'): compare_regression_models etr I ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-compare_regression_models_etr_II.R:25:5'): compare_regression_models etr II ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-compare_regression_models_total.R:34:5'): compare_regression_models etr I + II ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-eilers_peeters_etr_I.R:29:5'): test-eilers_peeters_etr_I generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-eilers_peeters_etr_I.R:95:5'): test-eilers_peeters_etr_I generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-eilers_peeters_etr_II.R:29:5'): test-eilers_peeters_etr_II generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-eilers_peeters_etr_II.R:78:5'): test-eilers_peeters_etr_II modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-platt_etr_I.R:29:5'): test-platt_etr_I generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-platt_etr_I.R:75:5'): test-platt_etr_I generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-platt_etr_II.R:29:5'): test-platt_etr_II generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-platt_etr_II.R:92:5'): test-platt_etr_II generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-vollenweider_etr_I.R:29:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-vollenweider_etr_I.R:92:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-vollenweider_etr_II.R:29:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-vollenweider_etr_II.R:92:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-walsby_etr_I.R:19:5'): test-walsby_etr_I generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-walsby_etr_I.R:82:5'): test-walsby_etr_I generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-walsby_etr_II.R:19:5'): test-walsby_etr_II generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-walsby_etr_II.R:82:5'): test-walsby_etr_II generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
[ FAIL 19 | WARN 10 | SKIP 0 | PASS 20 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(pam)
>
> test_check("pam")
file: 20231123_03.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231123_04.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231123_06.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231214.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231214_11.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_14.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_15.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_10.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
[ FAIL 19 | WARN 10 | SKIP 0 | PASS 20 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-compare_regression_models_etr_I.R:25:5'): compare_regression_models etr I ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-compare_regression_models_etr_II.R:25:5'): compare_regression_models etr II ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-compare_regression_models_total.R:34:5'): compare_regression_models etr I + II ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-eilers_peeters_etr_I.R:29:5'): test-eilers_peeters_etr_I generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-eilers_peeters_etr_I.R:95:5'): test-eilers_peeters_etr_I generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-eilers_peeters_etr_II.R:29:5'): test-eilers_peeters_etr_II generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-eilers_peeters_etr_II.R:78:5'): test-eilers_peeters_etr_II modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-platt_etr_I.R:29:5'): test-platt_etr_I generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-platt_etr_I.R:75:5'): test-platt_etr_I generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-platt_etr_II.R:29:5'): test-platt_etr_II generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-platt_etr_II.R:92:5'): test-platt_etr_II generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-vollenweider_etr_I.R:29:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-vollenweider_etr_I.R:92:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-vollenweider_etr_II.R:29:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-vollenweider_etr_II.R:92:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-walsby_etr_I.R:19:5'): test-walsby_etr_I generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-walsby_etr_I.R:82:5'): test-walsby_etr_I generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-walsby_etr_II.R:19:5'): test-walsby_etr_II generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-walsby_etr_II.R:82:5'): test-walsby_etr_II generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
[ FAIL 19 | WARN 10 | SKIP 0 | PASS 20 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [16s/26s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(pam)
>
> test_check("pam")
file: 20231123_03.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231123_04.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231123_06.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231214.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
file: 20231214_11.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_14.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_15.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating eilers peeters model: simpleWarning in value[[3L]](cond): failed to calculate etr_max: warning: simpleWarning in sqrt(a * c): NaNs produced
file: 20231214_10.csv processed with warning: simpleWarning in value[[3L]](cond): warning while calculating platt model: simpleWarning in value[[3L]](cond): failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced
[ FAIL 19 | WARN 10 | SKIP 0 | PASS 20 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-compare_regression_models_etr_I.R:25:5'): compare_regression_models etr I ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-compare_regression_models_etr_II.R:25:5'): compare_regression_models etr II ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-compare_regression_models_total.R:34:5'): compare_regression_models etr I + II ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-eilers_peeters_etr_I.R:29:5'): test-eilers_peeters_etr_I generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-eilers_peeters_etr_I.R:95:5'): test-eilers_peeters_etr_I generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-eilers_peeters_etr_II.R:29:5'): test-eilers_peeters_etr_II generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-eilers_peeters_etr_II.R:78:5'): test-eilers_peeters_etr_II modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-platt_etr_I.R:29:5'): test-platt_etr_I generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-platt_etr_I.R:75:5'): test-platt_etr_I generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-platt_etr_II.R:29:5'): test-platt_etr_II generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-platt_etr_II.R:92:5'): test-platt_etr_II generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-vollenweider_etr_I.R:29:5'): test-vollenweider_etr_I generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-vollenweider_etr_I.R:92:5'): test-vollenweider_etr_I generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-vollenweider_etr_II.R:29:5'): test-vollenweider_etr_II generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-vollenweider_etr_II.R:92:5'): test-vollenweider_etr_II generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-walsby_etr_I.R:19:5'): test-walsby_etr_I generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-walsby_etr_I.R:82:5'): test-walsby_etr_I generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-walsby_etr_II.R:19:5'): test-walsby_etr_II generate regression 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
── Error ('test-walsby_etr_II.R:82:5'): test-walsby_etr_II generate regression modified 20240925.csv ──
Error in `eval(code, test_env)`: Unsupported operating system: Darwin
[ FAIL 19 | WARN 10 | SKIP 0 | PASS 20 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64