CRAN Package Check Results for Package phangorn

Last updated on 2026-08-04 02:50:59 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.12.1 59.42 454.44 513.86 NOTE
r-devel-linux-x86_64-debian-gcc 2.12.1 38.86 316.40 355.26 NOTE
r-devel-linux-x86_64-fedora-clang 2.12.1 83.00 718.69 801.69 OK
r-devel-linux-x86_64-fedora-gcc 2.12.1 43.00 297.80 340.80 NOTE
r-devel-windows-x86_64 2.12.1 62.00 488.00 550.00 NOTE
r-patched-linux-x86_64 2.12.1 58.38 354.58 412.96 OK
r-release-linux-x86_64 2.12.1 56.13 354.79 410.92 OK
r-release-macos-arm64 2.12.1 12.00 86.00 98.00 OK
r-release-macos-x86_64 2.12.1 37.00 482.00 519.00 OK
r-release-windows-x86_64 2.12.1 65.00 397.00 462.00 OK
r-oldrel-macos-arm64 2.12.1 OK
r-oldrel-macos-x86_64 2.12.1 34.00 441.00 475.00 OK
r-oldrel-windows-x86_64 2.12.1 80.00 525.00 605.00 OK

Check Details

Version: 2.12.1
Check: R code for possible problems
Result: NOTE Found calls to structure() using deprecated special names: phangorn/R/bab.R (.Names: 3, .Dim: 2) phangorn/R/fitch64.R (.Dim: 1, .Names: 1) phangorn/R/phylo.R (.Dim: 2, .Names: 2) phangorn/R/splits.R (.Names: 1) '.Names' should be changed to 'names'. '.Dim' should be changed to 'dim'. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 2.12.1
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0AwKkB’ ‘~/tmp/scratch/Rtmp0QnWHU’ ‘~/tmp/scratch/Rtmp0mc1QE’ ‘~/tmp/scratch/Rtmp126UaA’ ‘~/tmp/scratch/Rtmp1I1OSi’ ‘~/tmp/scratch/Rtmp20V2x3’ ‘~/tmp/scratch/Rtmp2dtQoi’ ‘~/tmp/scratch/Rtmp2kgifN’ ‘~/tmp/scratch/Rtmp3GqV5e’ ‘~/tmp/scratch/Rtmp3bmrdJ’ ‘~/tmp/scratch/Rtmp4YDgqL’ ‘~/tmp/scratch/Rtmp4h1gnq’ ‘~/tmp/scratch/Rtmp4mBcPg’ ‘~/tmp/scratch/Rtmp4t6796’ ‘~/tmp/scratch/Rtmp4v9Ysp’ ‘~/tmp/scratch/Rtmp5QriV3’ ‘~/tmp/scratch/Rtmp5rn8KR’ ‘~/tmp/scratch/Rtmp65WvYj’ ‘~/tmp/scratch/Rtmp6RzlyE’ ‘~/tmp/scratch/Rtmp6agTMd’ ‘~/tmp/scratch/Rtmp7IOgPj’ ‘~/tmp/scratch/Rtmp7pMWKF’ ‘~/tmp/scratch/Rtmp8Wayiq’ ‘~/tmp/scratch/Rtmp8uussf’ ‘~/tmp/scratch/Rtmp9jbz18’ ‘~/tmp/scratch/RtmpA8jg58’ ‘~/tmp/scratch/RtmpA9yuIG’ ‘~/tmp/scratch/RtmpAauWkI’ ‘~/tmp/scratch/RtmpBI8Oxy’ ‘~/tmp/scratch/RtmpBREq6Q’ ‘~/tmp/scratch/RtmpCd0qad’ ‘~/tmp/scratch/RtmpDBVlUX’ ‘~/tmp/scratch/RtmpDEiiCT’ ‘~/tmp/scratch/RtmpDF8eZV’ ‘~/tmp/scratch/RtmpDt9MEE’ ‘~/tmp/scratch/RtmpF2YYPR’ ‘~/tmp/scratch/RtmpFALLSZ’ ‘~/tmp/scratch/RtmpFsh1Nm’ ‘~/tmp/scratch/RtmpFuGU6W’ ‘~/tmp/scratch/RtmpGsRtVR’ ‘~/tmp/scratch/RtmpH1IHrw’ ‘~/tmp/scratch/RtmpH95K9k’ ‘~/tmp/scratch/RtmpHDzpiS’ ‘~/tmp/scratch/RtmpHtIAjz’ ‘~/tmp/scratch/RtmpI0wM1W’ ‘~/tmp/scratch/RtmpJO3qaG’ ‘~/tmp/scratch/RtmpJPs7zy’ ‘~/tmp/scratch/RtmpJaOuNG’ ‘~/tmp/scratch/RtmpK1g4CM’ ‘~/tmp/scratch/RtmpK3Q5aZ’ ‘~/tmp/scratch/RtmpKAT9wA’ ‘~/tmp/scratch/RtmpL9vXgW’ ‘~/tmp/scratch/RtmpLdgk52’ ‘~/tmp/scratch/RtmpLtqBro’ ‘~/tmp/scratch/RtmpM2B8JS’ ‘~/tmp/scratch/RtmpMmIE1t’ ‘~/tmp/scratch/RtmpNCHmo8’ ‘~/tmp/scratch/RtmpNFRENe’ ‘~/tmp/scratch/RtmpNgdc5z’ ‘~/tmp/scratch/RtmpNmJKmw’ ‘~/tmp/scratch/RtmpO3qma0’ ‘~/tmp/scratch/RtmpOTCQJD’ ‘~/tmp/scratch/RtmpOwjLKt’ ‘~/tmp/scratch/RtmpPfptue’ ‘~/tmp/scratch/RtmpPl926l’ ‘~/tmp/scratch/RtmpQ8yBvi’ ‘~/tmp/scratch/RtmpQF27zx’ ‘~/tmp/scratch/RtmpQHbQnY’ ‘~/tmp/scratch/RtmpQQt4V2’ ‘~/tmp/scratch/RtmpQVkJ24’ ‘~/tmp/scratch/RtmpQaF24c’ ‘~/tmp/scratch/RtmpRFOfdK’ ‘~/tmp/scratch/RtmpRh4HOJ’ ‘~/tmp/scratch/RtmpS3GrLO’ ‘~/tmp/scratch/RtmpTBHDs3’ ‘~/tmp/scratch/RtmpTH8Wag’ ‘~/tmp/scratch/RtmpTdwLnk’ ‘~/tmp/scratch/RtmpTmCekX’ ‘~/tmp/scratch/RtmpTw52dv’ ‘~/tmp/scratch/RtmpUFtfwD’ ‘~/tmp/scratch/RtmpUHd9aI’ ‘~/tmp/scratch/RtmpUNYn37’ ‘~/tmp/scratch/RtmpV1nnhp’ ‘~/tmp/scratch/RtmpVJGKB4’ ‘~/tmp/scratch/RtmpWFcjDE’ ‘~/tmp/scratch/RtmpWS1u3W’ ‘~/tmp/scratch/RtmpXEzy03’ ‘~/tmp/scratch/RtmpXN8nXA’ ‘~/tmp/scratch/RtmpXYeRZB’ ‘~/tmp/scratch/RtmpXcHEvM’ ‘~/tmp/scratch/RtmpXcIAfz’ ‘~/tmp/scratch/RtmpXgayS7’ ‘~/tmp/scratch/RtmpXx98q2’ ‘~/tmp/scratch/RtmpXxtXJC’ ‘~/tmp/scratch/RtmpY82rcR’ ‘~/tmp/scratch/RtmpYyHiEF’ ‘~/tmp/scratch/RtmpZ9DFsn’ ‘~/tmp/scratch/RtmpZOhKuY’ ‘~/tmp/scratch/RtmpZoFGLI’ ‘~/tmp/scratch/RtmpaIEiQw’ ‘~/tmp/scratch/RtmpaIZDef’ ‘~/tmp/scratch/RtmpaYCJ8U’ ‘~/tmp/scratch/RtmpaaTtjo’ ‘~/tmp/scratch/RtmpaaXVZj’ ‘~/tmp/scratch/RtmpadDHVw’ ‘~/tmp/scratch/Rtmpbdxcxw’ ‘~/tmp/scratch/Rtmpc7YPpq’ ‘~/tmp/scratch/RtmpcsMm5J’ ‘~/tmp/scratch/RtmpcvDpnM’ ‘~/tmp/scratch/RtmpeFGa1P’ ‘~/tmp/scratch/RtmpeOP1Fz’ ‘~/tmp/scratch/RtmpevvUxz’ ‘~/tmp/scratch/RtmpfB1Ma7’ ‘~/tmp/scratch/RtmpfCEcB9’ ‘~/tmp/scratch/RtmpfHn9e3’ ‘~/tmp/scratch/RtmpfdfqdY’ ‘~/tmp/scratch/RtmphGTjId’ ‘~/tmp/scratch/RtmphU4sBB’ ‘~/tmp/scratch/RtmphgZZdP’ ‘~/tmp/scratch/RtmphkaYB6’ ‘~/tmp/scratch/RtmpiDAVka’ ‘~/tmp/scratch/RtmpiEGxe3’ ‘~/tmp/scratch/RtmpiG27H2’ ‘~/tmp/scratch/RtmpircPiz’ ‘~/tmp/scratch/Rtmpj9pAfc’ ‘~/tmp/scratch/RtmpjQ2I0r’ ‘~/tmp/scratch/RtmpjSRmeG’ ‘~/tmp/scratch/RtmpjgfAJe’ ‘~/tmp/scratch/RtmpkVJtLG’ ‘~/tmp/scratch/RtmpkrLUl0’ ‘~/tmp/scratch/Rtmpkwg9hg’ ‘~/tmp/scratch/RtmplSqWMo’ ‘~/tmp/scratch/RtmpmYtKii’ ‘~/tmp/scratch/RtmpmZUFr6’ ‘~/tmp/scratch/Rtmpn8j5ix’ ‘~/tmp/scratch/RtmpnK7GQp’ ‘~/tmp/scratch/RtmpnLRZvk’ ‘~/tmp/scratch/RtmpnOpqTX’ ‘~/tmp/scratch/RtmpnfW7Di’ ‘~/tmp/scratch/Rtmpnfsraq’ ‘~/tmp/scratch/RtmpnhnLGe’ ‘~/tmp/scratch/RtmpnrhU0T’ ‘~/tmp/scratch/RtmpoTn569’ ‘~/tmp/scratch/RtmpoiRSQq’ ‘~/tmp/scratch/Rtmppn03Oh’ ‘~/tmp/scratch/RtmppssMIs’ ‘~/tmp/scratch/RtmppuVlQY’ ‘~/tmp/scratch/RtmpqB47Yk’ ‘~/tmp/scratch/RtmpqufZQU’ ‘~/tmp/scratch/RtmpqvZ89M’ ‘~/tmp/scratch/Rtmpr4umBe’ ‘~/tmp/scratch/RtmprJ443J’ ‘~/tmp/scratch/Rtmprkp6YE’ ‘~/tmp/scratch/RtmprrItcq’ ‘~/tmp/scratch/RtmprwXRHo’ ‘~/tmp/scratch/RtmpsObpzM’ ‘~/tmp/scratch/RtmpunTdvE’ ‘~/tmp/scratch/RtmpvDZ7gP’ ‘~/tmp/scratch/RtmpvgpDTM’ ‘~/tmp/scratch/Rtmpvna1VW’ ‘~/tmp/scratch/RtmpvuySpa’ ‘~/tmp/scratch/RtmpvxnrUn’ ‘~/tmp/scratch/RtmpwEaxIg’ ‘~/tmp/scratch/RtmpwRjyCJ’ ‘~/tmp/scratch/RtmpwVBVzI’ ‘~/tmp/scratch/Rtmpx9XtV6’ ‘~/tmp/scratch/RtmpxpYG3I’ ‘~/tmp/scratch/Rtmpy29Fqf’ ‘~/tmp/scratch/RtmpyGRkfO’ ‘~/tmp/scratch/RtmpyHgTkM’ ‘~/tmp/scratch/RtmpycJBLS’ ‘~/tmp/scratch/RtmpyvPkfg’ ‘~/tmp/scratch/RtmpyydDqr’ ‘~/tmp/scratch/RtmpzI0eF3’ ‘~/tmp/scratch/RtmpzPDmPu’ ‘~/tmp/scratch/RtmpzsLLc5’ ‘~/tmp/scratch/RtmpzxO6W6’ ‘~/tmp/scratch/quarto-sessiondb7d8e01126a3587’ ‘~/tmp/scratch/xvfb-run.05jNRu’ ‘~/tmp/scratch/xvfb-run.1bCCiP’ ‘~/tmp/scratch/xvfb-run.1mQ2RB’ ‘~/tmp/scratch/xvfb-run.2V3JnS’ ‘~/tmp/scratch/xvfb-run.3ORAhO’ ‘~/tmp/scratch/xvfb-run.6NAXQe’ ‘~/tmp/scratch/xvfb-run.6apBsJ’ ‘~/tmp/scratch/xvfb-run.6rNOzd’ ‘~/tmp/scratch/xvfb-run.7mgfBR’ ‘~/tmp/scratch/xvfb-run.8qBKAy’ ‘~/tmp/scratch/xvfb-run.9M5CoL’ ‘~/tmp/scratch/xvfb-run.9zxTk9’ ‘~/tmp/scratch/xvfb-run.A0GzeH’ ‘~/tmp/scratch/xvfb-run.A85QDy’ ‘~/tmp/scratch/xvfb-run.AuTHAn’ ‘~/tmp/scratch/xvfb-run.B9Sy98’ ‘~/tmp/scratch/xvfb-run.D1tv8l’ ‘~/tmp/scratch/xvfb-run.DyATSA’ ‘~/tmp/scratch/xvfb-run.E9ColG’ ‘~/tmp/scratch/xvfb-run.Fi7rkx’ ‘~/tmp/scratch/xvfb-run.FiJMvz’ ‘~/tmp/scratch/xvfb-run.GQnTGk’ ‘~/tmp/scratch/xvfb-run.HcM7jM’ ‘~/tmp/scratch/xvfb-run.JDCh2n’ ‘~/tmp/scratch/xvfb-run.Joxk9e’ ‘~/tmp/scratch/xvfb-run.JvvmfI’ ‘~/tmp/scratch/xvfb-run.K2sXXK’ ‘~/tmp/scratch/xvfb-run.MTLWuM’ ‘~/tmp/scratch/xvfb-run.NIIShP’ ‘~/tmp/scratch/xvfb-run.NyBT67’ ‘~/tmp/scratch/xvfb-run.OjykiP’ ‘~/tmp/scratch/xvfb-run.QS9cBx’ ‘~/tmp/scratch/xvfb-run.SQtN6f’ ‘~/tmp/scratch/xvfb-run.Tfdn40’ ‘~/tmp/scratch/xvfb-run.UmRiYn’ ‘~/tmp/scratch/xvfb-run.VnsQsY’ ‘~/tmp/scratch/xvfb-run.WVxhZu’ ‘~/tmp/scratch/xvfb-run.WxBaEM’ ‘~/tmp/scratch/xvfb-run.ahLjfy’ ‘~/tmp/scratch/xvfb-run.cMSJCU’ ‘~/tmp/scratch/xvfb-run.cmUqcU’ ‘~/tmp/scratch/xvfb-run.dPnQyj’ ‘~/tmp/scratch/xvfb-run.duyHmJ’ ‘~/tmp/scratch/xvfb-run.eMCl7o’ ‘~/tmp/scratch/xvfb-run.gHorAx’ ‘~/tmp/scratch/xvfb-run.gnBxzY’ ‘~/tmp/scratch/xvfb-run.hSBJkv’ ‘~/tmp/scratch/xvfb-run.hSPheX’ ‘~/tmp/scratch/xvfb-run.iRVOkv’ ‘~/tmp/scratch/xvfb-run.inPXVq’ ‘~/tmp/scratch/xvfb-run.izt1BX’ ‘~/tmp/scratch/xvfb-run.jCJt9X’ ‘~/tmp/scratch/xvfb-run.jLYDOH’ ‘~/tmp/scratch/xvfb-run.jUt3QH’ ‘~/tmp/scratch/xvfb-run.kRGPKO’ ‘~/tmp/scratch/xvfb-run.kbnPGu’ ‘~/tmp/scratch/xvfb-run.kxMMaq’ ‘~/tmp/scratch/xvfb-run.lLFkJE’ ‘~/tmp/scratch/xvfb-run.llWQzk’ ‘~/tmp/scratch/xvfb-run.m0GpER’ ‘~/tmp/scratch/xvfb-run.mfAcy8’ ‘~/tmp/scratch/xvfb-run.nwCesH’ ‘~/tmp/scratch/xvfb-run.oSao4P’ ‘~/tmp/scratch/xvfb-run.p5HfG4’ ‘~/tmp/scratch/xvfb-run.p8mW2q’ ‘~/tmp/scratch/xvfb-run.puvxzB’ ‘~/tmp/scratch/xvfb-run.q30vKR’ ‘~/tmp/scratch/xvfb-run.rVm8ht’ ‘~/tmp/scratch/xvfb-run.sdbTHW’ ‘~/tmp/scratch/xvfb-run.tBvt0p’ ‘~/tmp/scratch/xvfb-run.tomItn’ ‘~/tmp/scratch/xvfb-run.uOenoz’ ‘~/tmp/scratch/xvfb-run.uXlujO’ ‘~/tmp/scratch/xvfb-run.v2mqIQ’ ‘~/tmp/scratch/xvfb-run.w4qAkO’ ‘~/tmp/scratch/xvfb-run.whBHdd’ ‘~/tmp/scratch/xvfb-run.xDVRbQ’ ‘~/tmp/scratch/xvfb-run.xHNFWE’ ‘~/tmp/scratch/xvfb-run.yC1ttj’ ‘~/tmp/scratch/xvfb-run.ymCbf7’ ‘~/tmp/scratch/xvfb-run.zCzVQB’ ‘/dev/shm/sm_segment.gimli1.1001.23c90000.0’ ‘/dev/shm/sm_segment.gimli1.1001.29730000.0’ ‘/dev/shm/sm_segment.gimli1.1001.2fc60000.0’ ‘/dev/shm/sm_segment.gimli1.1001.4dee0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.4eb30000.0’ ‘/dev/shm/sm_segment.gimli1.1001.5ffc0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.78620000.0’ ‘/dev/shm/sm_segment.gimli1.1001.7cf60000.0’ ‘/dev/shm/sm_segment.gimli1.1001.88f50000.0’ ‘/dev/shm/sm_segment.gimli1.1001.93b60000.0’ ‘/dev/shm/sm_segment.gimli1.1001.9b1b0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.9fd00000.0’ ‘/dev/shm/sm_segment.gimli1.1001.a7790000.0’ ‘/dev/shm/sm_segment.gimli1.1001.a9890000.0’ ‘/dev/shm/sm_segment.gimli1.1001.ad3a0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.be5b0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.dbd40000.0’ ‘/dev/shm/sm_segment.gimli1.1001.dff00000.0’ ‘/dev/shm/sm_segment.gimli1.1001.e2bb0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.f9c50000.0’ ‘/dev/shm/sm_segment.gimli1.1001.fa0b0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.fd6f0000.0’ ‘~/.cache/pocl/uncached/tempfile_3SA2ov’ ‘~/.cache/pocl/uncached/tempfile_6VweJ2’ ‘~/.cache/pocl/uncached/tempfile_AiOwse’ ‘~/.cache/pocl/uncached/tempfile_DalOKe’ ‘~/.cache/pocl/uncached/tempfile_GqUBIU’ ‘~/.cache/pocl/uncached/tempfile_KC4g3C’ ‘~/.cache/pocl/uncached/tempfile_Ldu9la’ ‘~/.cache/pocl/uncached/tempfile_WI3feU’ ‘~/.cache/pocl/uncached/tempfile_XGF3Ik’ ‘~/.cache/pocl/uncached/tempfile_YeXXsf’ ‘~/.cache/pocl/uncached/tempfile_ccazey’ ‘~/.cache/pocl/uncached/tempfile_d7D69L’ ‘~/.cache/pocl/uncached/tempfile_hUwz5D’ ‘~/.cache/pocl/uncached/tempfile_mYsxyz’ ‘~/.cache/pocl/uncached/tempfile_psdFyh’ ‘~/.cache/pocl/uncached/tempfile_roM7ym’ ‘~/.cache/pocl/uncached/tempfile_t4ZNnZ’ ‘~/.cache/pocl/uncached/tempfile_u5BQyF’ ‘~/.cache/pocl/uncached/tempfile_vIyLOu’ ‘~/.cache/pocl/uncached/tempfile_vzZnVf’ ‘~/.cache/pocl/uncached/tempfile_wFUyr2’ ‘~/.cache/pocl/uncached/tempfile_yBONbQ’ ‘~/.cache/pocl/uncached/tempfile_zXoYcQ’ Flavor: r-devel-linux-x86_64-debian-gcc