CRAN Package Check Results for Package phenofit

Last updated on 2026-09-19 03:00:08 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	0.3.11	56.76	218.13	274.89	OK
r-devel-linux-x86_64-debian-gcc	0.3.11	41.09	150.01	191.10	OK
r-devel-linux-x86_64-fedora-clang	0.3.11	44.00	137.48	181.48	OK
r-devel-linux-x86_64-fedora-gcc	0.3.11	46.00	138.34	184.34	OK
r-devel-windows-x86_64	0.3.11	74.00	324.00	398.00	ERROR
r-patched-linux-x86_64	0.3.11	59.43	199.12	258.55	OK
r-release-linux-x86_64	0.3.11	55.67	232.23	287.90	OK
r-release-macos-arm64	0.3.11	12.00	45.00	57.00	OK
r-release-macos-x86_64	0.3.11	35.00	194.00	229.00	OK
r-release-windows-x86_64	0.3.11	70.00	297.00	367.00	OK
r-oldrel-macos-arm64	0.3.11	10.00	44.00	54.00	OK
r-oldrel-macos-x86_64	0.3.11	35.00	182.00	217.00	OK
r-oldrel-windows-x86_64	0.3.11	83.00	359.00	442.00	OK

Check Details

Version: 0.3.11
Check: tests
Result: ERROR Running 'testthat.R' [55s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(phenofit) > > test_check("phenofit") Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Saving _problems/test-PhenoExtract-25.R List of 5 $ AG : tibble [6 × 8] (S3: tbl_df/tbl/data.frame) $ Beck : tibble [6 × 7] (S3: tbl_df/tbl/data.frame) $ Elmore: tibble [6 × 8] (S3: tbl_df/tbl/data.frame) $ Gu : tibble [6 × 10] (S3: tbl_df/tbl/data.frame) $ Zhang : tibble [6 × 8] (S3: tbl_df/tbl/data.frame) NULL # A tibble: 6 × 8 flag t0 mn mx rsp a3 rau a5 <chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> 1 1999_1 -135. 0.201 0.636 0.00932 2.85 0.00852 2 2 2000_1 189. 0.238 0.635 0.0126 2.47 0.00801 3.21 3 2001_1 569. 0.252 0.626 0.0108 2.96 0.00950 2.96 4 2002_1 892. 0.253 0.614 0.0159 2 0.00724 3.08 5 2003_1 1268. 0.236 0.577 0.0121 2.88 0.00723 2.88 6 2004_1 1676. 0.202 0.576 0.00839 2.81 0.00980 3.52 Saving _problems/test-PhenoExtract-53.R meth R2 NSE R RMSE pvalue n_sim <char> <num> <num> <num> <num> <num> <num> 1: AG 0.9986908 0.9985845 0.9993452 9.940385e-03 4.489925e-65 46 2: Beck 1.0000000 1.0000000 1.0000000 4.931510e-10 0.000000e+00 46 3: Elmore 1.0000000 1.0000000 1.0000000 3.945072e-10 0.000000e+00 46 4: Gu 1.0000000 1.0000000 1.0000000 5.218882e-11 0.000000e+00 46 5: Zhang 1.0000000 1.0000000 1.0000000 5.529113e-06 8.044939e-208 46 $AG formula: mn + (mx - mn) * exp(-((t0 - t) * rsp)^a3) formula: mn + (mx - mn) * exp(-((t - t0) * rau)^a5) pars: t0 mn mx rsp a3 rau a5 nlminb 149.8926 0.1020656 0.7095242 0.009389263 6 0.009367765 6 warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 1.65502e-16; attempting approx solution warning: solve(): system is close to singular; rcond: 2.19427e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 1.65502e-16; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 1.33432e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 2.38811e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 2.03034e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 1.33432e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 3.31005e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 3.08395e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 2.36432e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 6.97437e-18; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 1.85037e-16; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 2.80681e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 5.43896e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 2.38811e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 3.05447e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 2.11109e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 6.04329e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 1.85037e-16; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 2.80681e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 5.43896e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 3.31005e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 2.38811e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 3.31005e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 2.38811e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 1.94249e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 3.84957e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 3.31005e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 8.58712e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 2.38811e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 2.09346e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 3.82199e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 2.38705e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 2.38811e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 5.88785e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 1.85037e-16; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 7.40149e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 6.20634e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 2.38811e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 3.05447e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 2.11109e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 5.43896e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 4.38854e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 1.00786e-16; attempting approx solution warning: solve(): system is close to singular; rcond: 1.46031e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 5.02097e-17; attempting approx solution warning: solve(): system is close to singular; rcond: 1.25524e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 3.31005e-17; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is close to singular; rcond: 3.31005e-17; attempting approx solution [ FAIL 2 | WARN 2 | SKIP 0 | PASS 68 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-PhenoExtract.R:23:1'): (code run outside of `test_that()`) ─── Expected `{ ... }` to run silently. Actual noise: warnings. ── Failure ('test-PhenoExtract.R:50:5'): get_pheno.fFIT works ────────────────── Expected `{ ... }` to run silently. Actual noise: warnings. [ FAIL 2 | WARN 2 | SKIP 0 | PASS 68 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64