Last updated on 2026-08-04 02:51:02 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.13 | 6.87 | 195.23 | 202.10 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.3.13 | 5.25 | 129.24 | 134.49 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.13 | 12.00 | 296.16 | 308.16 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.13 | 122.33 | ERROR | |||
| r-devel-windows-x86_64 | 0.3.13 | 8.00 | 198.00 | 206.00 | ERROR | |
| r-patched-linux-x86_64 | 0.3.13 | 6.49 | 180.35 | 186.84 | ERROR | |
| r-release-linux-x86_64 | 0.3.13 | 5.78 | 181.69 | 187.47 | ERROR | |
| r-release-macos-arm64 | 0.3.13 | 2.00 | 55.00 | 57.00 | OK | |
| r-release-macos-x86_64 | 0.3.13 | 5.00 | 242.00 | 247.00 | OK | |
| r-release-windows-x86_64 | 0.3.13 | 8.00 | 193.00 | 201.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.3.13 | 2.00 | 55.00 | 57.00 | OK | |
| r-oldrel-macos-x86_64 | 0.3.13 | 5.00 | 190.00 | 195.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.13 | 11.00 | 270.00 | 281.00 | ERROR |
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [83s/108s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [51s/66s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.13
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0ETOW9’ ‘~/tmp/scratch/Rtmp0w8dUK’
‘~/tmp/scratch/Rtmp1L6Gma’ ‘~/tmp/scratch/Rtmp1ZGF7b’
‘~/tmp/scratch/Rtmp396wsO’ ‘~/tmp/scratch/Rtmp3WRm4f’
‘~/tmp/scratch/Rtmp3ew9re’ ‘~/tmp/scratch/Rtmp3vaGZ4’
‘~/tmp/scratch/Rtmp3yhlmy’ ‘~/tmp/scratch/Rtmp3z6GUF’
‘~/tmp/scratch/Rtmp45o9nz’ ‘~/tmp/scratch/Rtmp4lCzz9’
‘~/tmp/scratch/Rtmp5VA5CH’ ‘~/tmp/scratch/Rtmp5fX0zY’
‘~/tmp/scratch/Rtmp5nL6Fv’ ‘~/tmp/scratch/Rtmp6DSxzm’
‘~/tmp/scratch/Rtmp6SyqT7’ ‘~/tmp/scratch/Rtmp71sDS2’
‘~/tmp/scratch/Rtmp730OEW’ ‘~/tmp/scratch/Rtmp7CcRPF’
‘~/tmp/scratch/Rtmp7JlWb5’ ‘~/tmp/scratch/Rtmp8ebvAO’
‘~/tmp/scratch/Rtmp8o2hp8’ ‘~/tmp/scratch/Rtmp98EvtO’
‘~/tmp/scratch/Rtmp9WYX20’ ‘~/tmp/scratch/Rtmp9hFyZC’
‘~/tmp/scratch/Rtmp9oh1ir’ ‘~/tmp/scratch/Rtmp9s2qWQ’
‘~/tmp/scratch/RtmpAMdhMe’ ‘~/tmp/scratch/RtmpAgaJOL’
‘~/tmp/scratch/RtmpB70TI1’ ‘~/tmp/scratch/RtmpBIi0DQ’
‘~/tmp/scratch/RtmpBRkZOz’ ‘~/tmp/scratch/RtmpBtIPsw’
‘~/tmp/scratch/RtmpCDT1MY’ ‘~/tmp/scratch/RtmpCwf3yv’
‘~/tmp/scratch/RtmpD1LxWJ’ ‘~/tmp/scratch/RtmpD3wOGN’
‘~/tmp/scratch/RtmpDBo4Ha’ ‘~/tmp/scratch/RtmpDCjnJ3’
‘~/tmp/scratch/RtmpDM0JAm’ ‘~/tmp/scratch/RtmpDWk19x’
‘~/tmp/scratch/RtmpDdwCqh’ ‘~/tmp/scratch/RtmpDzcFvY’
‘~/tmp/scratch/RtmpE7mAuf’ ‘~/tmp/scratch/RtmpF14DtS’
‘~/tmp/scratch/RtmpH3Ni7h’ ‘~/tmp/scratch/RtmpH3pUfz’
‘~/tmp/scratch/RtmpIjFHQe’ ‘~/tmp/scratch/RtmpIy6Zzy’
‘~/tmp/scratch/RtmpIynOoZ’ ‘~/tmp/scratch/RtmpJeRQFC’
‘~/tmp/scratch/RtmpJknR8p’ ‘~/tmp/scratch/RtmpK9psT2’
‘~/tmp/scratch/RtmpKDXkll’ ‘~/tmp/scratch/RtmpLJXBVA’
‘~/tmp/scratch/RtmpLh4vRn’ ‘~/tmp/scratch/RtmpM0crm1’
‘~/tmp/scratch/RtmpN6CJiF’ ‘~/tmp/scratch/RtmpNKAune’
‘~/tmp/scratch/RtmpNOXuVk’ ‘~/tmp/scratch/RtmpNcKE9E’
‘~/tmp/scratch/RtmpNx6DOb’ ‘~/tmp/scratch/RtmpO5Mfvz’
‘~/tmp/scratch/RtmpOGMxxX’ ‘~/tmp/scratch/RtmpOqB0YW’
‘~/tmp/scratch/RtmpPFVOFQ’ ‘~/tmp/scratch/RtmpPhCAWT’
‘~/tmp/scratch/RtmpQ16EuA’ ‘~/tmp/scratch/RtmpQ9BITK’
‘~/tmp/scratch/RtmpQtuu8e’ ‘~/tmp/scratch/RtmpRUk1dF’
‘~/tmp/scratch/RtmpS8ILXH’ ‘~/tmp/scratch/RtmpSX78Me’
‘~/tmp/scratch/RtmpTLqlw1’ ‘~/tmp/scratch/RtmpUB9WvR’
‘~/tmp/scratch/RtmpUG3aGA’ ‘~/tmp/scratch/RtmpUlaFLD’
‘~/tmp/scratch/RtmpUoi4ze’ ‘~/tmp/scratch/RtmpV3mJN6’
‘~/tmp/scratch/RtmpVKlVk1’ ‘~/tmp/scratch/RtmpVmgrRg’
‘~/tmp/scratch/RtmpWLgisl’ ‘~/tmp/scratch/RtmpWTJeXa’
‘~/tmp/scratch/RtmpWbWpTW’ ‘~/tmp/scratch/RtmpWepqcN’
‘~/tmp/scratch/RtmpXYCHrd’ ‘~/tmp/scratch/RtmpXr70HD’
‘~/tmp/scratch/RtmpZ7U9uI’ ‘~/tmp/scratch/RtmpZKU5er’
‘~/tmp/scratch/RtmpZTWx3N’ ‘~/tmp/scratch/RtmpZgj6eV’
‘~/tmp/scratch/Rtmpa2fwP4’ ‘~/tmp/scratch/Rtmpa5tpbD’
‘~/tmp/scratch/RtmpbXVoCt’ ‘~/tmp/scratch/Rtmpbj2TAr’
‘~/tmp/scratch/Rtmpbq3NRP’ ‘~/tmp/scratch/RtmpcGOqvS’
‘~/tmp/scratch/RtmpcpmMhm’ ‘~/tmp/scratch/RtmpdGsOs9’
‘~/tmp/scratch/RtmpdNEY0K’ ‘~/tmp/scratch/Rtmpdw59Vm’
‘~/tmp/scratch/Rtmpf6qM4c’ ‘~/tmp/scratch/Rtmpfxo8B0’
‘~/tmp/scratch/Rtmph9xr0m’ ‘~/tmp/scratch/RtmphMzwq5’
‘~/tmp/scratch/RtmphcBbpW’ ‘~/tmp/scratch/RtmpiOuxJu’
‘~/tmp/scratch/RtmpibEc8i’ ‘~/tmp/scratch/RtmpilfwCN’
‘~/tmp/scratch/RtmpjnB9cO’ ‘~/tmp/scratch/RtmpkNAkTb’
‘~/tmp/scratch/RtmpkhMAs5’ ‘~/tmp/scratch/Rtmpkz2Ybo’
‘~/tmp/scratch/RtmpmT3JYk’ ‘~/tmp/scratch/RtmpmxPk5t’
‘~/tmp/scratch/RtmpniGlNB’ ‘~/tmp/scratch/RtmpnlSoTf’
‘~/tmp/scratch/RtmpnsJHU3’ ‘~/tmp/scratch/RtmpommBVe’
‘~/tmp/scratch/RtmpplMTQb’ ‘~/tmp/scratch/Rtmpqj2A6q’
‘~/tmp/scratch/RtmpqnoS2z’ ‘~/tmp/scratch/RtmprHJ4HH’
‘~/tmp/scratch/RtmprucfIl’ ‘~/tmp/scratch/Rtmps2B0Ql’
‘~/tmp/scratch/RtmpsK5c12’ ‘~/tmp/scratch/RtmpsMB8Yb’
‘~/tmp/scratch/Rtmpt6sKAz’ ‘~/tmp/scratch/Rtmpt98Z4T’
‘~/tmp/scratch/RtmptFytY1’ ‘~/tmp/scratch/RtmpuGAhgi’
‘~/tmp/scratch/Rtmpv8arHK’ ‘~/tmp/scratch/RtmpvwO51k’
‘~/tmp/scratch/RtmpwPLHcr’ ‘~/tmp/scratch/RtmpxDvjJB’
‘~/tmp/scratch/RtmpxSnRha’ ‘~/tmp/scratch/Rtmpz39wOP’
‘~/tmp/scratch/Rtmpz4Tsby’ ‘~/tmp/scratch/Rtmpz4x4DI’
‘~/tmp/scratch/RtmpzZEsMZ’ ‘~/tmp/scratch/RtmpzkZhHa’
‘~/tmp/scratch/Rtmpzv8k2z’ ‘~/tmp/scratch/Rtmpzyjdo9’
‘~/tmp/scratch/ccpgiwac.s’
‘~/tmp/scratch/quarto-sessioned04bfcaac3b5ef1’
‘~/tmp/scratch/xvfb-run.0G50UP’ ‘~/tmp/scratch/xvfb-run.146cTV’
‘~/tmp/scratch/xvfb-run.2rm0g9’ ‘~/tmp/scratch/xvfb-run.3UnIGA’
‘~/tmp/scratch/xvfb-run.3g6KsU’ ‘~/tmp/scratch/xvfb-run.51X5h6’
‘~/tmp/scratch/xvfb-run.5RuyYk’ ‘~/tmp/scratch/xvfb-run.94TooO’
‘~/tmp/scratch/xvfb-run.A7UDrL’ ‘~/tmp/scratch/xvfb-run.AuqyPD’
‘~/tmp/scratch/xvfb-run.AyXLPM’ ‘~/tmp/scratch/xvfb-run.BwITiP’
‘~/tmp/scratch/xvfb-run.EbjZ1B’ ‘~/tmp/scratch/xvfb-run.FYnh20’
‘~/tmp/scratch/xvfb-run.FnHuo7’ ‘~/tmp/scratch/xvfb-run.J5dOCY’
‘~/tmp/scratch/xvfb-run.JmDYT8’ ‘~/tmp/scratch/xvfb-run.KYS6ZG’
‘~/tmp/scratch/xvfb-run.Kdn1wh’ ‘~/tmp/scratch/xvfb-run.LHkYQ4’
‘~/tmp/scratch/xvfb-run.LpDfn5’ ‘~/tmp/scratch/xvfb-run.Ne10OV’
‘~/tmp/scratch/xvfb-run.NqflOy’ ‘~/tmp/scratch/xvfb-run.PUNM6P’
‘~/tmp/scratch/xvfb-run.QiEMCx’ ‘~/tmp/scratch/xvfb-run.R8Ngjr’
‘~/tmp/scratch/xvfb-run.TS2uqz’ ‘~/tmp/scratch/xvfb-run.TVvh8j’
‘~/tmp/scratch/xvfb-run.TsihpR’ ‘~/tmp/scratch/xvfb-run.TygK1T’
‘~/tmp/scratch/xvfb-run.UEFZah’ ‘~/tmp/scratch/xvfb-run.WEmOOv’
‘~/tmp/scratch/xvfb-run.XRnIBd’ ‘~/tmp/scratch/xvfb-run.Xna1ce’
‘~/tmp/scratch/xvfb-run.ZMhhqp’ ‘~/tmp/scratch/xvfb-run.a37SCJ’
‘~/tmp/scratch/xvfb-run.buUBp6’ ‘~/tmp/scratch/xvfb-run.c0NZ1b’
‘~/tmp/scratch/xvfb-run.dFMBCg’ ‘~/tmp/scratch/xvfb-run.eLRO5L’
‘~/tmp/scratch/xvfb-run.eSypTw’ ‘~/tmp/scratch/xvfb-run.egv4Wd’
‘~/tmp/scratch/xvfb-run.gCrpdX’ ‘~/tmp/scratch/xvfb-run.hdcLnO’
‘~/tmp/scratch/xvfb-run.hdqxDX’ ‘~/tmp/scratch/xvfb-run.hinatV’
‘~/tmp/scratch/xvfb-run.hqIgj6’ ‘~/tmp/scratch/xvfb-run.iAUDJS’
‘~/tmp/scratch/xvfb-run.jCrpsz’ ‘~/tmp/scratch/xvfb-run.lm6lgj’
‘~/tmp/scratch/xvfb-run.lmWl4E’ ‘~/tmp/scratch/xvfb-run.mk2Lvs’
‘~/tmp/scratch/xvfb-run.mvsPFT’ ‘~/tmp/scratch/xvfb-run.oBRjBV’
‘~/tmp/scratch/xvfb-run.ou1Zfl’ ‘~/tmp/scratch/xvfb-run.pLJhyu’
‘~/tmp/scratch/xvfb-run.rFIyix’ ‘~/tmp/scratch/xvfb-run.ref4Ib’
‘~/tmp/scratch/xvfb-run.sMiW3c’ ‘~/tmp/scratch/xvfb-run.sfNZ4O’
‘~/tmp/scratch/xvfb-run.tatOvh’ ‘~/tmp/scratch/xvfb-run.tqn3qW’
‘~/tmp/scratch/xvfb-run.uJGdpW’ ‘~/tmp/scratch/xvfb-run.xvzJQH’
‘~/tmp/scratch/xvfb-run.yTSZoN’ ‘~/tmp/scratch/xvfb-run.yWLnp9’
‘~/tmp/scratch/xvfb-run.zBiCYf’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [126s/165s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [48s/55s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.3.13
Check: tests
Result: ERROR
Running 'testthat.R' [72s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [77s/99s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [76s/113s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.3.13
Check: tests
Result: ERROR
Running 'testthat.R' [71s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.3.13
Check: tests
Result: ERROR
Running 'testthat.R' [109s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64