Last updated on 2025-12-19 14:50:36 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.1 | 2.12 | 43.35 | 45.47 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.3.1 | 1.83 | 33.61 | 35.44 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.3.1 | 61.68 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.1 | 47.55 | ERROR | |||
| r-devel-windows-x86_64 | 0.3.1 | 3.00 | 54.00 | 57.00 | OK | |
| r-patched-linux-x86_64 | 0.3.1 | 2.56 | 35.54 | 38.10 | OK | |
| r-release-linux-x86_64 | 0.3.1 | 1.93 | 35.48 | 37.41 | OK | |
| r-release-macos-arm64 | 0.3.1 | OK | ||||
| r-release-macos-x86_64 | 0.3.1 | 2.00 | 39.00 | 41.00 | OK | |
| r-release-windows-x86_64 | 0.3.1 | 3.00 | 52.00 | 55.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.1 | OK | ||||
| r-oldrel-macos-x86_64 | 0.3.1 | 2.00 | 50.00 | 52.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.1 | 4.00 | 62.00 | 66.00 | OK |
Version: 0.3.1
Check: examples
Result: ERROR
Running examples in ‘sleepr-Ex.R’ failed
The error most likely occurred in:
> ### Name: bout_analysis
> ### Title: Find "bouts" in categorical time series
> ### Aliases: bout_analysis
>
> ### ** Examples
>
> # Bout analysis on binary variable:
> dt <- toy_dam_data()
Error in `[.data.table`(out, , `:=`(activity, abs(c(0, diff(sign(0.5 - :
attempt access index 5/5 in VECTOR_ELT
Calls: toy_dam_data -> [ -> [.behavr -> NextMethod -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(sleepr)
Loading required package: behavr
Loading required package: data.table
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
>
> test_check("sleepr")
Saving _problems/test-max_velocity_detector-10.R
Saving _problems/test-max_velocity_detector-22.R
Saving _problems/test-prepare_data_for_motion_detector-14.R
Saving _problems/test-sleep_annotation-6.R
Saving _problems/test-sleep_annotation-31.R
Saving _problems/test-virtual_beam_cross_detector-10.R
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 25 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-bout_analysis.R:3:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-max_velocity_detector.R:10:3'): max_velocity_detector works ────
Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. └─sleepr::max_velocity_detector(data, 10) at test-max_velocity_detector.R:10:3
2. └─sleepr:::prepare_data_for_motion_detector(...)
3. └─sleepr:::curate_sparse_roi_data(d)
4. ├─data[, `:=`(n_points, .N), by = t_w]
5. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w)
── Error ('test-max_velocity_detector.R:21:3'): max_velocity_detector wans when no interaction and masking ──
Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-max_velocity_detector.R:21:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─sleepr::max_velocity_detector(data, 10)
7. └─sleepr:::prepare_data_for_motion_detector(...)
8. └─sleepr:::curate_sparse_roi_data(d)
9. ├─data[, `:=`(n_points, .N), by = t_w]
10. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w)
── Error ('test-prepare_data_for_motion_detector.R:11:3'): prepare_data_for_motion_detector works ──
Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. └─sleepr:::prepare_data_for_motion_detector(...) at test-prepare_data_for_motion_detector.R:11:3
2. └─sleepr:::curate_sparse_roi_data(d)
3. ├─data[, `:=`(n_points, .N), by = t_w]
4. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w)
── Error ('test-sleep_annotation.R:6:3'): sleep_annotation works return expected results ──
Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. └─sleepr::sleep_annotation(data, motion_detector_FUN = virtual_beam_cross_detector) at test-sleep_annotation.R:6:3
2. └─sleepr (local) wrapped(data)
3. └─sleepr (local) motion_detector_FUN(d, time_window_length, ...)
4. └─sleepr:::prepare_data_for_motion_detector(...)
5. └─sleepr:::curate_sparse_roi_data(d)
6. ├─data[, `:=`(n_points, .N), by = t_w]
7. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w)
── Error ('test-sleep_annotation.R:31:3'): sleep_annotation works for single or multiple animals ──
Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. └─sleepr::sleep_annotation(data[id == 1][, -"id", with = F], motion_detector_FUN = virtual_beam_cross_detector) at test-sleep_annotation.R:31:3
2. └─sleepr (local) wrapped(data)
3. └─sleepr (local) motion_detector_FUN(d, time_window_length, ...)
4. └─sleepr:::prepare_data_for_motion_detector(...)
5. └─sleepr:::curate_sparse_roi_data(d)
6. ├─data[, `:=`(n_points, .N), by = t_w]
7. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w)
── Error ('test-virtual_beam_cross_detector.R:10:3'): virtual_beam_cross_detector works ──
Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. └─sleepr::virtual_beam_cross_detector(data, 10) at test-virtual_beam_cross_detector.R:10:3
2. └─sleepr:::prepare_data_for_motion_detector(...)
3. └─sleepr:::curate_sparse_roi_data(d)
4. ├─data[, `:=`(n_points, .N), by = t_w]
5. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w)
[ FAIL 6 | WARN 0 | SKIP 1 | PASS 25 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc