Provide functionality for cancer subtyping using nearest centroids or machine learning methods based on TCGA data.
| Version: | 1.0.0 |
| Depends: | SummarizedExperiment, R (≥ 3.63) |
| Imports: | caret, randomForest, methods, e1071, pheatmap, tibble, dplyr, limma, rlang, Rdpack |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2024-03-22 |
| DOI: | 10.32614/CRAN.package.OncoSubtype |
| Author: | Dadong Zhang |
| Maintainer: | Dadong Zhang <dadong.zhang.shared at gmail.com> |
| BugReports: | https://github.com/DadongZ/OncoSubtype/issues |
| License: | GPL-3 |
| URL: | https://github.com/DadongZ/OncoSubtype |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | OncoSubtype results |
| Reference manual: | OncoSubtype.pdf |
| Vignettes: |
OncoSubtype (source, R code) |
| Package source: | OncoSubtype_1.0.0.tar.gz |
| Windows binaries: | r-devel: OncoSubtype_1.0.0.zip, r-release: OncoSubtype_1.0.0.zip, r-oldrel: OncoSubtype_1.0.0.zip |
| macOS binaries: | r-devel (arm64): OncoSubtype_1.0.0.tgz, r-release (arm64): OncoSubtype_1.0.0.tgz, r-oldrel (arm64): OncoSubtype_1.0.0.tgz, r-devel (x86_64): OncoSubtype_1.0.0.tgz, r-release (x86_64): OncoSubtype_1.0.0.tgz, r-oldrel (x86_64): OncoSubtype_1.0.0.tgz |
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