Provides a fast and accurate pipeline for single-cell analyses. The 'scDHA' software package can perform clustering, dimension reduction and visualization, classification, and time-trajectory inference on single-cell data (Tran et.al. (2021) <doi:10.1038/s41467-021-21312-2>).
| Version: | 1.2.2 |
| Depends: | R (≥ 3.4) |
| Imports: | matrixStats, foreach, doParallel, igraph, Matrix, uwot, cluster, Rcpp, RcppParallel, RcppAnnoy, methods, torch (≥ 0.3.0), RhpcBLASctl, coro |
| LinkingTo: | Rcpp, RcppArmadillo, RcppParallel, RcppAnnoy |
| Suggests: | testthat, knitr, mclust |
| Published: | 2024-04-02 |
| DOI: | 10.32614/CRAN.package.scDHA |
| Author: | Ha Nguyen [cre], Duc Tran [aut], Tin Nguyen [fnd] |
| Maintainer: | Ha Nguyen <hvn0006 at auburn.edu> |
| BugReports: | https://github.com/duct317/scDHA/issues |
| License: | GPL-3 |
| Copyright: | see file COPYRIGHTS |
| URL: | https://github.com/duct317/scDHA |
| NeedsCompilation: | yes |
| Citation: | scDHA citation info |
| Materials: | README NEWS |
| CRAN checks: | scDHA results [issues need fixing before 2025-03-14] |
| Reference manual: | scDHA.pdf |
| Vignettes: |
scDHA package manual |
| Package source: | scDHA_1.2.2.tar.gz |
| Windows binaries: | r-devel: scDHA_1.2.2.zip, r-release: scDHA_1.2.2.zip, r-oldrel: scDHA_1.2.2.zip |
| macOS binaries: | r-devel (arm64): scDHA_1.2.2.tgz, r-release (arm64): scDHA_1.2.2.tgz, r-oldrel (arm64): scDHA_1.2.2.tgz, r-devel (x86_64): scDHA_1.2.2.tgz, r-release (x86_64): scDHA_1.2.2.tgz, r-oldrel (x86_64): scDHA_1.2.2.tgz |
| Old sources: | scDHA archive |
| Reverse depends: | scCAN |
| Reverse imports: | ScRNAIMM |
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