simlandr 0.4.0
- Added simulation helper functions
sim_SDE()
and
multi_init_simulation()
for simulating stochastic
differential equations (SDEs) and multiple initial conditions,
respectively.
- Added
as.mcmc.list()
method for lists of simulation
outputs. The added simulation functions also have the option to return
the output as an mcmc
or mcmc.list
object, so
that they can be used with coda
functions.
- The landscape estimation functions now get a new parameter
weight_var
to specify the variable that contains the weight
of each sample point. This may be useful if user applies importance
sampling.
- Added vignettes and more examples.
simlandr 0.3.1
- Removed unused parameter
Umax
from the documentation of
make_kernel_dist()
(an internal function).
simlandr 0.3.0
- Further improved documentation, function, and class names, and
cleaned unnecessary exported functions. Removed some deprecated
functions.
- Made the parameter names of the landscape functions more consistent;
used better default values for landscape functions.
- For single simulation landscape functions, added
make_*d_single()
alias.
- Removed some default values for barrier calculation functions (they
are often not suitable and can be misleading).
- Added
print()
, summary()
and
plot()
methods for several classes.
- Replaced
get_geom()
with a method of the
autolayer()
generic function from ggplot2
.
get_geom()
is now deprecated.
- Replaced
get_barrier_height()
with a method of the
summary()
generic function.
get_barrier_height()
is now deprecated.
- Renamed
hash_big.matrix
class to
hash_big_matrix
for consistent use of dots; renamed related
functions accordingly.
- Added
coda::cumuplot()
as a possible option for
check_conv()
.
- For
barrier_batch
objects, renamed the column
b
to barrier
to avoid possible conflicts.
- Removed some unnecessary messages.
- Added some examples to
README
.
- Updated the vignette: updated some function, object, and parameter
names; removed some references that we are now questioning.
- Bug fix: Parameter
vg
in
make_barrier_grid_2d()
and
make_barrier_grid_3d()
was changed to ag
and
the class of this parameter was changed from var_grid
(deprecated) to arg_grid
.
simlandr 0.2.1
- Updated roxygen2 version to ensure html5 compatibility (>= R
4.2.0).
simlandr 0.2.0
- Renamed
var
and par
in batch simulation
functions to arg
(argument) and ele
(element).
- Adjusted the algorithm of calculating minimal energy paths
(previously “minimal elevation paths”).
- Added an non-gradient example function
sim_fun_nongrad()
; renamed sim_fun_test2()
to
sim_fun_grad()
.
- Added title for the color bar in
plot_ly
based plots;
used theme_bw()
throughout all ggplot2
based
plots.
- Improved some documentation; included a new vignette.
simlandr 0.1.2
- Improved the manual.
- Added
sim_fun_test2
function for testing.
- Added
...
for batch_simulation()
.
- Added border for white dots in the geom of
calculate_barrier_2d()
and
calculate_barrier_2d_batch()
.
simlandr 0.1.1
- Cleaned the package to make it CRAN-compatible.
simlandr 0.1.0