Spatiotemporal Nutrient Balance Analysis Across Agricultural and
Municipal Systems
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Documentation for package ‘manureshed’ version 0.1.2
Help Pages
| manureshed-package | manureshed: Manureshed Analysis with WWTP Integration |
| add_centroid_coordinates | Add Centroid Coordinates to Spatial Data |
| add_texas_huc8 | Add Texas HUC8 Data (Updated for OSF) |
| agri_classify_complete | Complete Agricultural Classification Pipeline |
| agri_classify_complete_custom | Complete Agricultural Classification Pipeline with Custom Efficiency Factors |
| agri_classify_nitrogen | Classify Agricultural Nitrogen Status |
| agri_classify_nitrogen_custom | Classify Agricultural Nitrogen Status with Custom Efficiency Factor |
| agri_classify_phosphorus | Classify Agricultural Phosphorus Status |
| agri_classify_phosphorus_custom | Classify Agricultural Phosphorus Status with Custom Efficiency Factor |
| agri_process_nugis | Process NuGIS Data for Manureshed Analysis |
| batch_analysis_enhanced | Enhanced Batch Analysis with Full Visualizations |
| batch_analysis_parallel | Batch Analysis with Parallel Processing |
| batch_analysis_years | Batch Analysis Across Multiple Years |
| benchmark_analysis | Benchmark Analysis Performance |
| calculate_cropland_threshold | Calculate Cropland Threshold for Exclusion |
| calculate_transition_probabilities | Calculate Spatial Transition Probabilities |
| check_builtin_data | Check Data Availability from OSF |
| citation_info | Display Package Citation Information |
| clean_category_names | Clean Category Names for Display |
| clean_text | Clean Text Data |
| clear_data_cache | Clear Data Cache |
| compare_analyses | Compare Two Analysis Results |
| compare_regions | Compare Multiple Regions |
| compare_scenarios | Compare Multiple Analysis Scenarios |
| CONUS_STATES | CONUS States |
| convert_load_units | Convert Load Units to Tons |
| create_analysis_report | Create Analysis Report |
| create_classification_summary | Create Classification Summary Table |
| create_network_plot | Create Network Plot from Transition Probabilities |
| data_sources | NuGIS and EPA WWTP Data Sources |
| download_all_data | Download All Datasets from OSF |
| download_osf_data | Download and Cache Data from OSF |
| export_for_gis | Export Results for GIS Applications |
| export_for_policy | Export for Policy Briefs |
| export_for_publication | Export for Publication |
| filter_by_state | Filter Data by State |
| format_huc8 | Format HUC8 Codes |
| get_cropland_threshold | Get Cropland Threshold by Scale |
| get_nutrient_colors | Default Color Schemes for Nutrient Classifications |
| get_region_definitions | Get Built-in Region Definitions |
| get_state_boundaries | Get State Boundaries for Mapping |
| get_state_fips | Get State FIPS Code |
| health_check | Check Package Health and Dependencies |
| integrate_complete | Complete Integration Pipeline (Updated) |
| integrate_wwtp_agricultural | Integrate WWTP Data with Agricultural Classifications (Updated) |
| KG_TO_TONS | Conversion Factor: Kilograms to US Tons |
| launch_dashboard | Launch Interactive Manureshed Dashboard |
| LBS_TO_KG | Conversion Factor: Pounds to Kilograms |
| LBS_TO_TONS | Conversion Factor: Pounds to US Tons |
| list_available_years | List Available Built-in Years |
| list_regions | List Available Regions |
| load_builtin_boundaries | Load Built-in Spatial Boundaries from OSF |
| load_builtin_nugis | Load Built-in NuGIS Data from OSF |
| load_builtin_wwtp | Load Built-in WWTP Data from OSF |
| load_user_wwtp | Load User WWTP Data |
| manureshed | manureshed: Manureshed Analysis with WWTP Integration |
| MANURESHED_CRS | Standard CRS for Manureshed Analysis |
| map_agricultural_classification | Create Agricultural Classification Map |
| map_wwtp_columns | Map WWTP Column Names to Standard Format |
| map_wwtp_influence | Create WWTP Influence Map |
| map_wwtp_points | Create WWTP Point Map |
| P2O5_TO_P | Conversion Factor: P2O5 to P |
| plot_absolute_changes | Create Absolute Change Plot |
| plot_before_after_comparison | Create Before/After Comparison Plot |
| plot_impact_ratios | Create Impact Ratio Plot |
| quick_analysis | Quick Analysis with Visualization |
| quick_check | Quick Data Check |
| quick_state_analysis | Quick State Analysis with Visualization |
| run_builtin_analysis | Complete Manureshed Analysis Workflow (Built-in Data) |
| run_state_analysis | Run State-Level Analysis |
| save_analysis_summary | Save Analysis Summary |
| save_centroid_data | Save Centroid Data |
| save_plot | Save Plot |
| save_spatial_data | Save Spatial Data |
| save_transition_matrix | Save Transition Probability Matrix |
| summarize_results | Print Summary of Analysis Results |
| test_osf_connection | Test OSF Connection |
| validate_columns | Validate Required Columns |
| view_cheatsheet | View Package Cheat Sheet |
| wwtp_aggregate_by_boundaries | Aggregate WWTP Data by Spatial Boundaries |
| wwtp_classify_sources | Classify WWTP Sources by Load Size |
| wwtp_clean_data | Clean WWTP Data |
| wwtp_filter_positive_loads | Filter WWTP Data for Positive Loads |
| wwtp_process_complete | Complete WWTP Processing Pipeline |
| wwtp_to_spatial | Convert WWTP Data to Spatial Format |