Tree Layout Algorithms for Phylogenetic Trees and Other Tree-Like Structures

Documentation for package ‘treelayout’ version 0.1.0

calculate_angle	Calculate angle coordinates for circular layouts
calculate_branch_mid	Branch mid-point coordinates
clade_geometry	One call instead of three. Returns the left and right boundary angles of the clade subtree, the largest distance from 'node' to any node inside the clade, and the largest distance from the root of the whole tree to any node - the two radii the clade label / hilight code needs.
Date2decimal	convert Date to decimal format, eg "2014-05-05" to "2014.34"
decimal2Date	convert decimal format to Date, eg "2014.34" to "2014-05-05"
getXcoord2	x coordinates from an edge list
getYcoord	y coordinates for tips
get_layout	Read the layout recorded on a layout result
layout_names	Layout names accepted by 'tree_layout()'
re_assign_ycoord_df	Re-assign y coordinates
tree_layout	Compute node coordinates for a tree