2a7e670f8894bf822bc12037b8170441 *DESCRIPTION
c0da7863a96a5197ecd913622f5d7715 *NAMESPACE
4c5504f490f7fc26549f826014942bdc *R/006.fixVarArgs.R
dcb0e44d79e9859ee6006eb8c70b2837 *R/999.NonDocumentedObjects.R
77d1871b32b5caecaf40a1cc0b310e2d *R/999.package.R
116d203b9e7229953f6de256d256f8ac *R/AbstractCBS.PLOT.R
4e666d7487652788fd10321771ae3155 *R/AbstractCBS.R
65f2dc1931436fffcecb34683c4822f9 *R/AbstractCBS.RESTRUCT.R
8e956f1df2370083e37ec5d4e9381280 *R/CBS.CALL.R
1bb825ec0bd707825063acd58a8e6000 *R/CBS.EXTS.R
ad71c6d3556a9d18bae9dd172011aa25 *R/CBS.IO.R
920f42f5431843ed2a661209f3446656 *R/CBS.PLOT.R
566d5f409571fb9547f26a6071970aa3 *R/CBS.R
2404a4353983bace9349d7553d6869b0 *R/CBS.RESTRUCT.R
282016ca1a5077f176f65be6b694325e *R/CBS.joinSegments.R
b5d1352116d5019312c4d04c66e0a117 *R/CNA.EXTS.R
2162d34db9d25424f6fd107352e50ed7 *R/DNAcopy.EXTS.R
e9744e0380cbe7d59f0c30cd3610fbf9 *R/PSCBS.EXTS.R
3a0c5acdc727bbd576ec817828168e52 *R/PSCBS.RESTRUCT.R
dc14feedeff13e77110cac84ecc90a30 *R/PairedPSCBS.BOOT.R
edb8bdcabdf3f66f3019ee00ffcf139d *R/PairedPSCBS.BOOT2.R
5eb72b38ef68073661b6994ba09bdb35 *R/PairedPSCBS.CALL.R
352f4e40097bc15f4addfef1be8d37b7 *R/PairedPSCBS.EXTS.R
6416b0ee77668da9c4f2075461224de4 *R/PairedPSCBS.EXTS3.R
90a05bceb2702d7e363be06925d6b153 *R/PairedPSCBS.PLOT.R
10460f9150d5fa2538623c1d2d643a2a *R/PairedPSCBS.PLOT2.R
dad1cffac043eb438acee2a8cba60976 *R/PairedPSCBS.R
5f2ff5e5fe86d5ed7c391f7ac3bcb106 *R/PairedPSCBS.RESTRUCT.R
1756549a73a3ce773ab836f25e8a51bd *R/PairedPSCBS.applyByRegion.R
958728ec1631ee2cff28e1966d0b3414 *R/PairedPSCBS.callAB.R
158455e10c30b77ec9d4848c7c816b25 *R/PairedPSCBS.callLOH.R
01d3accc7b5480dcfd115149394ec9df *R/PairedPSCBS.callROH.R
a9b1f6b2f41fc33f3e24d989bf6e07e0 *R/PairedPSCBS.estimateDeltaAB.R
e21455382b640ec51a24b5647e858cb5 *R/PairedPSCBS.estimateDeltaLOH.R
b24171b05f1448d94158f167656e8988 *R/PairedPSCBS.estimateKappa.R
300d6368965ba3833628e8c9f843b661 *R/callSegmentationOutliers.R
4d7a3c9ebe2cc59bc8bbdeda9d4c13d0 *R/drawLevels.DNAcopy.R
478b1aa926f57509b2ba1e9530862bdf *R/installDNAcopy.R
6ae35e0638a2ab60bce48602bdefbfa7 *R/segmentByCBS.R
0c557a88330f17dce40d2cacd76a6c86 *R/segmentByPairedPSCBS.R
fbea4b6d8cdc516cfc44c5b30965d5d5 *R/testROH.R
75169b11411696abdcb85c284156648f *R/weightedQuantile.R
7c268c38e184269a3d9333a802f75795 *R/zzz.R
854f8699de48b4deecd4aa766e9c47c7 *incl/999.missingdocs.txt
28122107c97ed62b29c7ccb213d9deee *incl/BengtssonH_etal_2010.Rd
2bcd843fc81f4d736b7e430c0e75ce9b *incl/OlshenA_etal_2011.Rd
5a707f9030b99348ebedf539761ad2f6 *incl/OlshenVenkatraman_2004.Rd
2cb15227fc9da636150e12c696f285ac *incl/VenkatramanOlshen_2007.Rd
332e31533688e5a4ffb6c33549ab6db3 *incl/as.DNAcopy.Rex
ddd6775f71e632d908435128efc7762b *incl/segmentByCBS,calls.Rex
c9bcb9f203b98be26b677b9beebec40a *incl/segmentByCBS,knownCPs.Rex
72cfc381225ddf435e75ed25665228ed *incl/segmentByCBS,plot.Rex
c7e292658140c48418e764881863acd9 *incl/segmentByCBS,tests.Rex
d41b7fc96024349135ff3a8b8f0495d5 *incl/segmentByCBS.Rex
952722b54ecdf144131410133a7c5cbe *incl/segmentByPairedPSCBS,allLOH.Rex
342780c4e32783b054c62c2edf16ad35 *incl/segmentByPairedPSCBS,knownCPs.Rex
a1b2a40a5fcc73745c8f421fb823c315 *incl/segmentByPairedPSCBS.Rex
969c5d1b080b2c7e3cab72a8d02d5fd9 *inst/NEWS
e493db8d572c0c0665213feea8ee0b89 *inst/data-ex/PairedPSCBS,exData,chr01.Rbin
a746e9caa4b1782a82f8643cc29be68e *man/AbstractCBS.Rd
67ff71a9720f0ccd9399d7a92697237b *man/CBS.Rd
81b285faef3509b76a3e41cf15cfb7f0 *man/Non-documented_objects.Rd
0fb5b9fba85146f3d0c0f88b32ab10c6 *man/PSCBS-package.Rd
4b87f6cac4269343578703a02dee0ad0 *man/PSCBS.Rd
3bab0798569577adaaae2203325e9957 *man/PairedPSCBS.Rd
e902357f561a9cf0ba644d0e4b100e82 *man/Restructuring_AbstractCBS_objects.Rd
58c7a2524f3eac570d0fea8cceb842bd *man/append.AbstractCBS.Rd
53224e9276d05b1f34b38e170f5147b5 *man/append.CBS.Rd
e57f86f50fe0f07254fdf02e22967d4f *man/append.PSCBS.Rd
118a61b10b45e019100947f467cedb36 *man/as.CBS.DNAcopy.Rd
c75206c4f9cc9976562bc4118ac8b72e *man/as.DNAcopy.CBS.Rd
06367aa0a12ce644ee7dce80824e3708 *man/as.data.frame.AbstractCBS.Rd
fccb7ad0c6000c747c4d0a55c4164acf *man/as.data.frame.CBS.Rd
ca9a0fa3b9abb182a4ede17191b34c4f *man/callAB.PairedPSCBS.Rd
8ed632d39a9ea660ce996785705aab82 *man/callAllelicBalanceByDH.PairedPSCBS.Rd
a543063831279a93b8b9ba605ed0e31d *man/callAmplifications.CBS.Rd
5a4cf852e9394320fd1a9d2853e6015f *man/callGainsAndLosses.CBS.Rd
790ca7b62182baf7346d316875f486f9 *man/callLOH.PairedPSCBS.Rd
08e8b8ce8abf9d209b050fe9d3b1130e *man/callOutliers.CBS.Rd
31093d87b5bcf8bb90f09ee3447edb2a *man/callROH.PairedPSCBS.Rd
660796b12fd2a07c079d6f18b1db303b *man/callSegmentationOutliers.Rd
d76c62648e2118cd50334e633fa5d923 *man/dropRegions.AbstractCBS.Rd
87db0f192c2c31921d588733b80b15bd *man/estimateDeltaAB.PairedPSCBS.Rd
1617ccd97dc5e6beb6fb64b0fe2bfd70 *man/estimateDeltaABBySmallDH.PairedPSCBS.Rd
ed65c56ad6e423f2bd65b3bbb5c96fda *man/estimateDeltaLOH.PairedPSCBS.Rd
9e9c068c1d3d41e195c13f578a8cd919 *man/estimateDeltaLOHByMinC1ForNonAB.PairedPSCBS.Rd
360585bbf44e605f4f9fe9095cc1d1a9 *man/estimateKappa.PairedPSCBS.Rd
5f2eb364b95c4fadc9e642780e7f1bb2 *man/estimateKappaByC1Density.PairedPSCBS.Rd
13a5e0eea592056480397dd1613e51a1 *man/estimateStandardDeviation.CBS.Rd
3a84554e65f5cb459e114e163937a2ae *man/extractMinorMajorCNs.PairedPSCBS.Rd
54a16e8e9c863901773f41860cc925cb *man/extractSegmentMeansByLocus.CBS.Rd
5072e82910bfe25d9e000f9e45ab257b *man/extractTCNAndDHs.PairedPSCBS.Rd
0c3067c4c4de5e8325009537bca8d1a7 *man/getCallStatistics.CBS.Rd
bcf57cf704fd6f4892787d78341b4f4f *man/getChromosomes.AbstractCBS.Rd
ff250f5a0c943c9d2558df7d074c2eba *man/getFractionOfGenomeLost.CBS.Rd
80597f99643517ab1de4b347de216945 *man/getLocusData.AbstractCBS.Rd
0ca0a123fff6772544f5f871cbfbd17f *man/getSampleName.AbstractCBS.Rd
2f8fee29999bba2bfb79f1931fa29dfd *man/getSegments.AbstractCBS.Rd
07da5679223d742bd4c94980fffdcbe5 *man/getSegments.PSCBS.Rd
3148099f30753ebcd091b818cd4375cc *man/installDNAcopy.Rd
f4159cf0116d248bbf317d017396bd5d *man/load.AbstractCBS.Rd
d5c26d36f656d4bff5f4b6c80ae778a5 *man/mergeNonCalledSegments.CBS.Rd
e6321e429da7e45356bf688d55cdf78c *man/mergeThreeSegments.AbstractCBS.Rd
a43138768865aaa1afe4bc94fe40e996 *man/mergeTwoSegments.AbstractCBS.Rd
1bfea9398686e6af211ca0f32155d951 *man/mergeTwoSegments.PairedPSCBS.Rd
86fbb6964990962a70fd4a7dbb26752b *man/nbrOfChangePoints.AbstractCBS.Rd
7bede6c0987148a477410cfdda4c56b9 *man/nbrOfChromosomes.AbstractCBS.Rd
9e2646d6bba6c522cd57d28bc3b680d0 *man/nbrOfLoci.AbstractCBS.Rd
d17e225d817de471fdb28ed28ff3346a *man/nbrOfSegments.AbstractCBS.Rd
60c1fe4c7a997aafb500bc283658767c *man/plotTracks.AbstractCBS.Rd
8a17ff341757393ce9cf026d2d9dc198 *man/plotTracks.CBS.Rd
a67164f008a128ac19af8caf51139a1d *man/plotTracks.PairedPSCBS.Rd
5c074422c311c9c7b04a8901ff09d6d5 *man/save.AbstractCBS.Rd
a7ef6f140341892cfd8f1f73069697ec *man/segmentByCBS.Rd
48fd2c947f139e6292d25e66778673bd *man/segmentByPairedPSCBS.Rd
9bea8c4866bcea0e06f4b997af52048b *man/setSampleName.AbstractCBS.Rd
8e080ad61ad5afa8cc0f2ca8890bded5 *man/weightedQuantile.Rd
e17e32bf1b2760da3b4dac94fe11e838 *man/writeSegments.CBS.Rd
