956ee65edc56fec6cdffef4d67c33259 *DESCRIPTION
76b30ac69df3282da30f279a3df36805 *NAMESPACE
997eed0813f155a9c7578c11584da785 *R/coi5p.r
27a305de8f37ac7d835db7ba9c70cd25 *R/coil.r
542385a7e5efa8e06262f40292dbd936 *R/datasets.r
3fa2b562bbeb1ff661b307149c9bde3f *R/deploy_PHMMs.r
0391ef44e0dae5e836245a1f9e35f1a2 *R/pipeline.r
b6f83588777fde9e749838f1e343ec85 *R/print.r
12d9ba17d473800404a2c6e084094a32 *R/subset_PHMM.r
d692fe5673d27dcaa5c29194281da028 *R/sysdata.rda
d178e462d0b87ed51aa0463d5f7b07f6 *R/translation.r
705b46ee09b3996e0d2e0f6f02d24706 *README.md
ed4c43b63ab2213be77c69b191030958 *build/vignette.rds
ef3550853445be1090ee86feb2f85022 *data/example_barcode_data.RData
962a7cdbbb3937c151c7131a8ed4e8c7 *inst/doc/coil-vignette.R
38a1283341cde885b6f037feef1e4fb7 *inst/doc/coil-vignette.Rmd
833a80bd6937557efc5c76c268479fe8 *inst/doc/coil-vignette.html
a622c4a8593ec2840d88a56525d4261b *inst/extdata/example_barcode_data.fasta
baf4a0b95b28cfb3905ef52af5746e6a *man/aa_coi_PHMM.Rd
44c68a77058b139fe0bb67732e77c7f5 *man/censored_translation.Rd
58783158ef39436aa3c4768211aec5f5 *man/coi5p.Rd
1e98d24c740646c23a6b52d925e310fe *man/coi5p_pipe.Rd
d848541917bc2a110856296b51eb5a12 *man/coil.Rd
ff49909b73426d2fbdc6f07a9d12b1d3 *man/example_barcode_data.Rd
0aa14be255d2ee64d9c5ee1470e5beaf *man/example_nt_string.Rd
1cfbee564410f7bc57d7457a5d2adfed *man/flatten_coi5p.Rd
92ec2db7f0d76f8d01c506fdf4faffac *man/frame.Rd
8dc0b32e914e90414a85ebe46f4ce533 *man/indel_check.Rd
c9c2781a5d9d239226acb922252a4f5e *man/individual_AAbin.Rd
b4ea779aec7cd04dbba7aeda9502ae32 *man/individual_DNAbin.Rd
937a0d87f5734126d91b36c294279e3d *man/ins_front_trim.Rd
18571c919d448ed9e88f0a8e4bfca544 *man/leading_ins.Rd
8721b881cb00b24e9c50ec14cfe8922d *man/new_coi5p.Rd
b0bb84b2bb7c448b2ac574733b168264 *man/nt_coi_PHMM.Rd
55c87b17b3365e53cc3b72a0a393f693 *man/print.coi5p.Rd
6c00fbe9570877ab195cc6e05ff2375d *man/set_frame.Rd
b31e94dc95231e46dd9dd5aac13928a4 *man/subsetPHMM.Rd
1345b81a618cf1fc60db28ee89deb5a7 *man/trans_df.Rd
bf51e2018b6df1ce6a41570803fec219 *man/translate.Rd
046351fd9b36aee1b1dfb7cf795c183b *man/translate_codon.Rd
7aaab25d6d245e64ed3532e3ba816d19 *man/validate_coi5p.Rd
85ad32ca0ddec804c38f32cbbe2182ae *man/which_trans_table.Rd
99c22256a10370e38bf9dc09d67f8403 *tests/testthat.R
19b12aff4c8d872b8c53e58bfaad01af *tests/testthat/test_badCalls.r
6383b6c3fadf2a05a34a2bfa306b2f1e *tests/testthat/test_delSeq.r
c8233bc903704540753e1e0ea838ef8d *tests/testthat/test_frameNotes.r
1fdcad8d0323afc93baf5f93b530fc9a *tests/testthat/test_goodSeq.r
aec472df95c6036988c344402a49e7df *tests/testthat/test_inSeq.r
0d2934eef55da8a1176f521de907d05c *tests/testthat/test_longSeq.r
d893e5c348b6b3c24b38f2f069526b57 *tests/testthat/test_print.r
f98003278df8d31175fab35a14baae96 *tests/testthat/test_shortSeq.r
cd0bf7eca379ef7f0590c449edec01fb *tests/testthat/test_sparseSeq.r
fa20d4151e9bcf8611846e3be1ccba56 *tests/testthat/test_subsetPHMM.r
8e906ff40f6a96552068097af0099d89 *tests/testthat/test_translate.r
dbc04f4231467c2e0ec5e708dc4d4d08 *tests/testthat/test_workflow.r
38a1283341cde885b6f037feef1e4fb7 *vignettes/coil-vignette.Rmd
