47b76e85f9e32f9334efd639af500fb7 *DESCRIPTION
ca48befaab46c5c47916f7402fec0a67 *NAMESPACE
0a2ecfc85e9f236e5df1408d0bdc0bb2 *R/batchHansen.R
506b39b94913511f3f3c1eb2404702aa *R/informationCriterion.R
a4ab749b48fe2ff7ed7c708c91da249b *R/multiModel.R
9bcb0b40a86e2db137c4f61dbf3cee3d *R/ouSim.hansenBatch.R
6ab5c0298947ad07e7f2953f4df0698b *R/ouSim.ouchtree.R
fb9d24b3334690b104a5ff2d6cac4416 *R/ouSim.phylo.R
8f7c849af21be9dbd6451010f91692e2 *R/ouSimHead.R
3a76e6ef02da86329e7422ed0ad74929 *R/plot.ouSim.R
2d07f26f72bc2b8968a84dc90c43f150 *R/regimes.R
ea8e136fabf8e536550b18c215d0b605 *R/summarizingAnalyses.R
0c92941be887da7c6b24bfff782e8229 *R/treeTraversal.R
98635bcac966a3de25aa6f0436ad5c45 *TODO
e3ef55e5bc5138e368c0a08686096081 *data/carex.rda
ec8ecd42060f0e0f89c577f650f05c23 *inst/VERSIONS
506ec5d02e0de7baaedc73e82175f477 *inst/doc/maticce.Rnw
8b182e66dd5bc3081fb4b3ea1ce1f365 *inst/doc/maticce.pdf
3c34afdc3adf82d2448f12715a255122 *inst/gpl
ace64b380b19d2027b7a9366f77e1eae *inst/license
9caa5d5885d8912049cb4050c1921bca *man/carex.Rd
00329ec840d5d61b73679762b619741d *man/informationCriterion.Rd
36b3ea45919a594562f5983cac582d14 *man/isMonophyletic.Rd
36e47ed7d4816922c1719a8d9ddd4676 *man/multiModel.Rd
96d19f73f7ef7197fcd5ce57d1cae4bb *man/ouSim.Rd
0eea4377de1de6359825029a6919cdee *man/paintBranches.Rd
c8c8e26bc3071af1fab225d7ffbb7cee *man/plot.ouSim.Rd
f654898e8db4f635ccae998cc5b11d5a *man/regimeMaker.Rd
5940baac6c6fc3e58e06564596b963f1 *man/regimeMatrix.Rd
e5f343740a521461754ab933e413ac94 *man/regimeVectors.Rd
469b96dee2d4d6912cd7db4632c8ac33 *man/runBatchHansen.Rd
8edf1bd651df9de2a955aa6c5f22cca1 *man/summary.hansenBatch.Rd
4abd2a550335c2acdd8328a90d182449 *misc/OLDregimes.R
dc8490cd858538e56f17e2e749032be2 *misc/batchHansenVignette.Rnw
95a2741dfa594bc72d80609d1a09b77c *misc/carex.R
d0ed5a8f0871e37cc9387f4ffcbbdd58 *misc/carex.rda
b6beef6d46c809ff3e97eec6ff29f2fe *misc/chromo.txt
ffed55fa9623e66a3237fa1f7765e56d *misc/multiModels-dataFormat.csv
790f898b1b778e01b5673876d9495d75 *misc/nodes.R
ed7802bf73eda17fd906cb7a14827fba *misc/oldRegimeMatrix.R
7b1521ea665d3aa465c1e45bcabd3b64 *misc/originalApeToOuch_NU.R
7df5361075469a50d3b0e88617ff1499 *misc/originalBatchHansenFit.R
b4f1a588d73a3ce978dcee0bcad79896 *misc/ouSim.ouchtree-2jun09WorkingSnap-versionFromTextfileSVN.R
167e654a47f7095841687f9e867f6af3 *misc/ouSim.ouchtree-2jun09WorkingSnap.R
6c818eabf27acc4582f8cc65146b7db3 *misc/preorderOU-29may09.snapshot
856e45cc313ff86fc312374eee8a9dcd *misc/taxonSets.R
8356ed90cca4ed322d54c19ddf248272 *misc/timingRegimeMatrix.txt
