58a3dd5f5df2022a61362f8535aaf18d *DESCRIPTION
6b291fd0fe877f08010aef2ef2572fd9 *LICENSE
4c7bcb3a8f04c151dedc6c2870687943 *NAMESPACE
38a39af88cf912e5459ce90b101afa85 *R/combat_helpers.R
33f91bc02259fe2bd985d2fc59b725ca *R/get_discordance_thold.R
46374c0e7ceaafe7608c5f4cf83e5c08 *R/get_long_data.R
a3c015091a3157e77a56cf9cefdb932f *R/get_otsu_tab.R
1698fa9d430c5733dbaf983adbc7a49d *R/get_umap_data.R
b8fd1c1fafcab95a307984c6559d52d6 *R/get_umap_reduction.R
3132a05c47eeb40c425e041905f63bca *R/get_var_data.R
bd7ffcd5aafa66b8bcd1c72afe070528 *R/get_var_proportions.R
ba678af188b48ba6cbf3909015ee24d6 *R/global.R
8c69e15de6d7e5413fe3d010d19327a1 *R/mx_dataset.R
cd27a39f3945c503b4d899877dc567c7 *R/mx_normalize.R
483887e338b4217d0752e692d06369f9 *R/mx_sample.R
c7fc3417a4cda17d051efc6c7f1e927f *R/new_mx_dataset.R
59f00f7f8d82173085d55f8a3d6cd7a1 *R/normalize_mx_combat.R
4841541f1a8fbc8de1bb4e8cbca0d3d9 *R/normalize_mx_dataset.R
f1d4420bfa1c0494b562e8abe9d72148 *R/normalize_mx_registration.R
47cca018dcbb023582552316bdb12e0a *R/otsu_helpers.R
a844e1b37062a104213da0dbde74b9bb *R/otsu_mx_dataset.R
7f5b72ccf7769a8b02eff958c3a93839 *R/otsu_mx_discordance.R
b9635d38e3a17118d5d49c319115dea0 *R/plot_mx_density.R
3e099c6841fd571407a707a4c64973b7 *R/plot_mx_discordance.R
21e260cb9884e5de359d1b0d96900e78 *R/plot_mx_proportions.R
9fae7ce59e50b82beb680ac1fc18944a *R/plot_mx_umap.R
956f2a8250c93f09123a8a8c3d71ac69 *R/registration_helpers.R
093982adfbfa98a11463d6f7613ae0d1 *R/run_otsu_discordance.R
ebd96fa92cca62408345fa4d1647f2b1 *R/run_reduce_umap.R
8d2bc1f4bd88a4d4b36cec6293e2d09f *R/run_var_proportions.R
2ca265ad42c6a14c262e39c65e2653ac *R/summary.R
0099496aa30dbc5456cb348d84876027 *R/transform_mx_dataset.R
2b04dd03ee756b9d244ded94ca0c7034 *R/trim_dataset.R
6d9348eae338dd70075afa0579603ca2 *R/utils-pipe.R
95dace1e08549f8140eff06a27421199 *R/validate_method_override.R
b0c84c9f6926796cbe1e3bdcbb796509 *R/validate_mx_dataset.R
f990d3194ff069d3fcb14583f240f457 *R/validate_mx_normalize_params.R
da41ee6c32ebedd793b585e5507c2f95 *R/validate_otsu_discordance_params.R
0c756d4ead67e54305f66b23006be9db *R/validate_reduce_umap_params.R
186ea9ce54ff1ac23be865268e9867f5 *R/validate_threshold_override.R
537091de94fd602d0ba65b3c68ec654c *R/validate_var_proportions_params.R
9bc08a0891989792c284ebeb379771f9 *README.md
d913e91f62122fdba8da62f0ae2db1b4 *build/vignette.rds
e2d6069c5fa3f217ecfc598ae8e28feb *data/mx_sample.rda
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d3ca24868aba6239bdfb3de426a0ab4d *man/check_data_values.Rd
30936cb7d7d15e7a9d23c1c041897691 *man/check_threshold.Rd
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60977b21be5fe0c6735536718f27a977 *man/get_discordance_thold.Rd
d40cc00704554eabab5d32bd5d3bc09f *man/get_long_data.Rd
ffa2dee7cb027194ea179f3ca7e58eca *man/get_otsu_tab.Rd
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66c135f6faf5b0636f2fa002db6a9959 *man/get_umap_data.Rd
a16c08a30a1213fb216a47fe06b5416f *man/get_umap_reduction.Rd
1b12f49fd66b95f96299feb84d83d3be *man/get_var_data.Rd
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a1fc7735862daed5bb725aaf3fd1b883 *man/mx_dataset.Rd
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43f8ec612296ba46a5e6586ef8b8121e *man/normalize_mx_dataset.Rd
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2fa6f0577b4b3d76bb288bfc7c22f7cf *man/otsu_mx_discordance.Rd
60d5943f6e229e99964db04966c938f6 *man/otsu_mx_error.Rd
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61f58622fd3f457b9e743cd49dc7275c *man/plot_mx_proportions.Rd
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420e3f30254e7cf5c47379b419199e77 *man/print.summary.mx_dataset.Rd
fe3d17c53ba136ecb0de9e770ec4486c *man/run_combat.Rd
d75a1095a581ecdba94e5b18c8c67a79 *man/run_otsu_discordance.Rd
ffaa6ed05a1fdb2825c60a312e2b7831 *man/run_reduce_umap.Rd
9c70534e24692157115812d73f2e4a4f *man/run_registration.Rd
3144179659d7ba71f8df6b7e110f6415 *man/run_var_proportions.Rd
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8004e98c7d7fdfd41a0a000c2e2229d1 *man/transform_mx_dataset.Rd
457f800b148de4f2677948371909bd20 *man/trim_dataset.Rd
866c75153369a23e5f6dd644cc0235e2 *man/update_delta.Rd
5ba656f6af5bbbc44f891199dabbdc16 *man/update_gamma.Rd
ff868d7755e48e048ad3d41620696633 *man/validate_method_override.Rd
bf618f0ae2c5a2b8f405c1499d3024d6 *man/validate_mx_dataset.Rd
a74116dae34305f27f11ba228b3083dc *man/validate_mx_normalize_params.Rd
ee67aa4988f20d0745df4bd30bc1708f *man/validate_otsu_discordance_params.Rd
a8f0f02c11d676f5bd15f7108f2390e6 *man/validate_reduce_umap_params.Rd
2312d5a2c32011ae7385e240e6489408 *man/validate_threshold_override.Rd
5e7df752597c47877d9a7d50b2cd3ea6 *man/validate_var_proportions_params.Rd
5c77c3e3a2e7077c0423748335d9bc3d *man/weighted.mean.fd.Rd
11c609d5f8d4567949bffcb28d9cd1c9 *tests/testthat.R
50f4b6350e60ca11ca9a3947f07e57e5 *tests/testthat/test-mx_dataset.R
8c3d75884b109ad8f11d7bc9b593a99d *tests/testthat/test-mx_normalize.R
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6167c659c13d06c3ec66bc62a5680004 *tests/testthat/test-plot_mx_discordance.R
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f900536189d9948cd1884d559562dbf7 *vignettes/mxnorm-vignette.Rmd
0b3758d0acd7d5ce590ef52300f2dd92 *vignettes/mxnorm_structure.png
c1d614d1e13b7d55e99f4288045e90ba *vignettes/mxnorm_vcitations.bib
