d8cdab068622923c0aa934e7f8bf5f84 *CHANGELOG
606002ad37430be7dfb144a88a0a2320 *DESCRIPTION
ec83afadeb72b4b025941ac922aad57e *NAMESPACE
98bdda871278c2aea66bd98eed9c9b6d *R/DiversityCurves.R
35c0482a0fb7610174c98475efa3e644 *R/RaiaCopesRule.R
389518c08e2a2bf1223d2322add5aded *R/SamplingConv.R
9d9e93e255198d11b9119a1d5b89eada *R/SongZhangDicrano.R
f38feb1801045aaa54a21f183e8c0fd9 *R/binTimeData.R
377109014ea55c76ec844d032d3cac05 *R/branchClasses.R
dd5dad0cfccf1f2b15e97d470bdced74 *R/cal3TimePaleoPhy.R
73916834e00eac458e9b49a9e0364e91 *R/cladogeneticTraitCont.R
716121d9f70e009fa1067da3901d3db6 *R/communityEcology.R
4dfcf41f703e885ebd6b6aa4125a0827 *R/compareTimescaling.R
104507c5201ab3d7fc8556d0bc818942 *R/constrainParPaleo.R
39b413110001bd0c66fbb032b96c8454 *R/createMrBayesConstraints.R
404186a209f6e85f9e3322ea5fffc430 *R/createMrBayesTipCalibrations.R
f071a488f63412548e0bd18ca6662d3e *R/createMrBayesTipDatingNexus.R
55394611b090bf4f6be565b966392e62 *R/dateNodes.R
0b1717b69fd106600597f8e8d64e3c1b *R/degradeTree.R
9a5ecb62355280240831647506adeaae *R/depthRainbow.R
ef87f0159a94362489b46e28ddba3bb2 *R/divCurveFossilRecordSim.R
906b3899d3da71006ee2b59d1580dc28 *R/durationFreq.R
c9264c1c7f5f882a72637e154d09e3ed *R/equation2function.R
016a114df54fedda22eb667e652cdd8b *R/expandTaxonTree.R
2bde1b9a1f8ece74be807e4deb3cb285 *R/footeValues.R
487c6b6001795dacaa63ba394b4ecb34 *R/fourDateFunctions.R
94e767a440327b3293866b44da2767bd *R/freqRat.R
26612a0e218f6286bedc7387ceffb14e *R/getFixedAgesFromNexus.R
2f51054465263058f49d35a686721db0 *R/graptDisparity.R
c2148c229e99a172443772d234edf3f9 *R/graptPBDB.R
071392bb7341830f24b07148efc8f8b9 *R/hiddenFunctions.R
adefd2a5c9cd27d5dba68e3bba700f61 *R/horizonSampRate.R
788b8b8708460f0fb2eac1966a1bd8d3 *R/inverseSurv.R
348c4cd4aa4af20aba8c2dfcaefc3318 *R/isTimeListSequential.R
345da292c51db847c848b42e70257912 *R/kanto.R
02a914676506d03ab6732fddeb5d6c4b *R/macroperforateForam.R
b0bd690f5c7321af3f37f0bbb09aac24 *R/makePBDBtaxonTree.R
8c088060bacd43ca0915b34b53ca0676 *R/minBranchLength.R
41834e9a25c4c6f7f7f16186ccd83380 *R/minCharChange.R
a8631d689236c7437ce9fb320bc482d4 *R/modelMethods.R
85fc09c7c09b3b803e9d5750d720fe8a *R/modifyTerminalBranches.R
47551b10596d0549acc2509dcb7622ba *R/multiDiv.R
fda79530871a4d943164eff4b422367e *R/nearestNeighborDist.R
1ee65412da34eb0b1bb02a8eb0f5540b *R/obtainDatedPosteriorTreesMrB.R
e360e7eee9a64388c31a06c091744021 *R/occData2timeList.R
57dd3c9b9ae1ba2a04542e8c52020791 *R/optimPaleo.R
74644844ab0217799683811e90980dec *R/paleotree-package.R
ed57bfbe4a23174617dcd8efe986378c *R/parentChild2taxonTree.R
07fa97d98e9157291084838199be24e3 *R/parseNexusFile.R
c4c25caf11fe4669e7c0152b0499408f *R/perCapitaRates.R
680da3721fda8b306b5a822c09ca3b7d *R/perfectParsCharTree.R
a500d38b13981f84d2ee10f3e8d3c3d7 *R/plotOccData.R
938a6a0eb93eee59e8446061079c24a8 *R/plotTraitgram.R
c830b5d2abeffaac0cd4e534fb19086c *R/pqr2Ps.R
b7d4ebef191ddc0467fa1f85783dae5c *R/probAnc.R
1d95df309f1b245bc43bf747e83a0505 *R/resolveTreeChar.R
624b1c435b2f074a67f94889ae02eba5 *R/retiolitinae.R
24809d933e90c24e557af54ad3a3758e *R/reverseList.R
8a72d5ac690ec2768910123c87a4c15b *R/rootSplit.R
445dbc9defeee45aa4829ecee712d6fa *R/sampleRanges.R
495f207afc3e897a1f3bd676046a0915 *R/seqTimeList.R
e510124e722620e17ae1a13a60e26166 *R/setRootAge.R
91ebdb024bf1a81819a8dad61c777deb *R/simFossilRecord.R
dce4f0d7139b5473b0ceb7a4c92f4c61 *R/simFossilRecordInternal.R
27a8e3ce044b18e867f9b565c5bae3b7 *R/simFossilRecordMethods.R
2c66fe36e77d7e56afe563d27a9388f3 *R/taxa2cladogram.R
ff756807ba019babe66f6f776df0d16f *R/taxa2phylo.R
c89c0cb444d0a60ec9d5ffef1c1f4048 *R/taxonSortPBDBocc.R
4ae63e1a1b8b663c998b3be2bf7c83f3 *R/taxonTable2taxonTree.R
f3c880cfe50e30ddae0abb12a2324195 *R/termTaxa.R
cb6d98f2a88c264be9bf45daa3c5d16e *R/testEdgeMat.R
337bbb6deb0577bea89ed5dcf4ea3f9e *R/timeLadderTree.R
22dcfa82fca9ef82e9cfbd574ff4d349 *R/timePaleoPhy.R
df7f12ad0183965e2afef57a976eefcc *R/timeSliceTree.R
cd6e25d6dc8c5dce0645acca9a307124 *R/treeContradiction.R
3f0c2ecebeaa1617ed96b2eeaf425bb7 *R/unitLengthTree.R
356a815657ca06f3a2119aa8b85dcb4c *R/writeSimpleSumtNexus.R
f0b4d039c8bcbfb560e8111845450e5a *README.md
3f77eef7d0a08b3b97d5cf56cc097564 *data/RaiaCopesRule.rdata
c6a942cb2471a72e031e79c403b62a1a *data/SongZhangDicrano.rdata
ef3ff58dc33ca33553a6f4ba1f50537e *data/graptDisparity.rdata
a3bdfc8934dc8b9591d30d4e2e998d34 *data/graptPBDB.rdata
3fb237530f5ade8ac33ddd97e6b0d102 *data/kanto.rdata
f077ebe2c98eab07650805743f31369d *data/macroperforateForam.rdata
7afe8498c4d2a3d0e2d60599db8b186f *data/retiolitinae.rdata
c4e4ef39537762c865406511fef7e58f *inst/CITATION
5f98b274191466e4a8d98b1bad072d01 *man/DiversityCurves.Rd
26453e0e27665d225a5ae5f23c43e622 *man/RaiaCopesRule.Rd
2582690cbfe563b29c217dffc9dd58bb *man/SamplingConv.Rd
1d1372b4276f6d0426b37b1ac63590ff *man/SongZhangDicrano.Rd
fe78ca0eee41fb65ac27227bad476176 *man/binTimeData.Rd
8a8643a203cdb4177c2127f31bb77739 *man/branchClasses.Rd
e44a30911b4b446ebd98d324a56d1da7 *man/cal3TimePaleoPhy.Rd
e7a6aa074fd907a8082df7d0a9dbbe4e *man/cladogeneticTraitCont.Rd
1c5880c347a5f72de76ee112efb85d15 *man/communityEcology.Rd
aab635692800c4b718508e56eb1fe887 *man/compareTimescaling.Rd
145b9f04b66cebfbc9b21f0ea0f3e914 *man/constrainParPaleo.Rd
07a16b7b7b868c09328ce350661e4ed1 *man/createMrBayesConstraints.Rd
1c592334a137232476a6190c37e0bb5e *man/createMrBayesTipCalibrations.Rd
a2a9ca535345ec2c2254e54658d2b2eb *man/createMrBayesTipDatingNexus.Rd
af80b240220015eae6a98602eb96dd9d *man/dateNodes.Rd
03829a670e6a9aed0051e4baa1097649 *man/degradeTree.Rd
aeed58e575fdb196b571d77a6cfb243f *man/depthRainbow.Rd
01b832a02615d25b41f8920e28bc1a9a *man/divCurveFossilRecordSim.Rd
4ce0df2a8a7266fab0771bb1caf1bd5c *man/durationFreq.Rd
8a0901cdb79235a0a8944788966083fd *man/equation2function.Rd
faba490745c71b9e51b239a1f3d2e0ee *man/expandTaxonTree.Rd
978fcabb1e0181fe1ee8cce76927c4dc *man/footeValues.Rd
e21fa39471848040ae64a387fb8b27c2 *man/freqRat.Rd
119fd06fb1e275d6d4a3158efc67fe52 *man/graptDisparity.Rd
7b443b1a994ef225f94092f0c34be1ac *man/graptPBDB.Rd
1c43b7a35f0d7e2b18b19850b5fa8e41 *man/horizonSampRate.Rd
23d0fe1548effc9ebb431eb043464fac *man/inverseSurv.Rd
05bdbf6967b53851e467683d114ed1ae *man/kanto.Rd
7b6e0d348d14806b7ced229899f42f3b *man/macroperforateForam.Rd
0fe18de0e4f6b0beae7579ce22893ab6 *man/makePBDBtaxonTree.Rd
0e12f413cdc5585eab8b0932fde895d9 *man/minBranchLength.Rd
cf6cd5b87e2546d68179e9a84ded7bb7 *man/minCharChange.Rd
143c8ee86b50a7ebe4e7e4e4f3d529a4 *man/modelMethods.Rd
6390e3862bbf3c3db008040b0e66c79c *man/modifyTerminalBranches.Rd
6f2c45cb254e32009b132f5832423931 *man/multiDiv.Rd
cc2ad7f75e771461855c8b30d7b05418 *man/nearestNeighborDist.Rd
c686df6182655b2effa5f2e4acbbe2dd *man/obtainDatedPosteriorTreesMrB.Rd
048ec4dcf034132d59073939db0910c8 *man/occData2timeList.Rd
775a5e4671d832bb3bbe76aeedf93569 *man/optimPaleo.Rd
b8476310c4a0f5a1f43730e07fb2967a *man/paleotree-package.Rd
ac9377d505902fe4a0c2375800205853 *man/parentChild2taxonTree.Rd
9932499737766a1f030be47ad374642e *man/perCapitaRates.Rd
9b946b98d1e850c51a027b8b8276807d *man/perfectParsCharTree.Rd
12c87a5ebe67f4de27998d239fb2fd68 *man/plotOccData.Rd
6a2f257290febc722c932f5166fd72c5 *man/plotTraitgram.Rd
c7a571ea796d85669efb6c11f84dbc44 *man/pqr2Ps.Rd
e219abcfc0e94263438bc3657666b95a *man/probAnc.Rd
4cb89aaeff0897e32814242a03f5a158 *man/resolveTreeChar.Rd
cc54cc96200078d9aa8270140eaf3c18 *man/retiolitinae.Rd
c9c2d1c0fd27be913344eea063b1d8a2 *man/reverseList.Rd
056fc4883de510eb5ad08f1d8b184a6e *man/rootSplit.Rd
00342fcf780de3dabebc766923fe15a4 *man/sampleRanges.Rd
245a53ad397cb52e9aae501d6b0ceca8 *man/seqTimeList.Rd
d7b86d424e87d7c3e619a6c27b232037 *man/setRootAge.Rd
33c9a1138cf536219be6e32908d1533b *man/simFossilRecord.Rd
d1177428783550c4999002eac3a890b5 *man/simFossilRecordMethods.Rd
2f24f8729039e000168ba16396c2f576 *man/taxa2cladogram.Rd
b84298c1c5f5f358c7a81c7d4975a72f *man/taxa2phylo.Rd
b443da363d82ed5ec7aaa9aeb65a2373 *man/taxonSortPBDBocc.Rd
55f26d5b1bc7597dc7b18fb653e6a0af *man/taxonTable2taxonTree.Rd
1fa0ababba58e15bcc77ba671b511cd5 *man/termTaxa.Rd
f7ed001d1bb54d0aacc44cba34eb3cfd *man/testEdgeMat.Rd
3501059f17d006c0f75b778f0a38e7a5 *man/timeLadderTree.Rd
9ebfd1ce01e19496cf33a11cab292a93 *man/timeList2fourDate.Rd
0e0dc6296758ab2cb5245ab013a1dfd0 *man/timePaleoPhy.Rd
68578206e1573353d3ae5f97569d1da8 *man/timeSliceTree.Rd
e86a6646aea166761af8f7e32c107109 *man/treeContradiction.Rd
a6f6fa262e275eb9a8933700d1707c89 *man/unitLengthTree.Rd
82ff48b9e4ff09248ca9188b89ed9770 *tests/minBranchLength_check_10-09-15.R
8dbb4c41d24ea32996c039f9213ce2d7 *tests/testContradiction_tests_05-25-17.R
