1f78fd30d659a07254e4edf6a828ca4d *DESCRIPTION
6ea98d6cf36657a1e20c5956e7b12fc3 *NAMESPACE
d76f2d29110c1ee975b54a0d618d644a *R/PTM_MarkerFinder.R
5b8840cb519e2d80d0b18a8f24047cf9 *R/RcppExports.R
edb55dbf703db5095ca2da3acd2b1510 *R/aa2mass.R
e474472ae1e9a38ba5d12c4f45fda68f *R/de_novo.R
2ba4ef134407d04e229bed9ae53977ec *R/deisotoper.R
937beeab4ef1e1d9df1a207cf53b801d *R/findNN.R
2db37167c5a9c035f6a5152fa5fc2b92 *R/fragmentIon.R
451317ef11b6a2f96b8694a36552047c *R/genMod.R
383914886d1596b45fdde36cd38553ce *R/iTRAQ2GroupAnalysis.R
93c5f4f5632186564153d385761976e5 *R/lcmsmap.R
bd2c9ce55ef2ad34370fccf14bd6082b *R/mascot.R
6842712841339c3928f48636f8e54f7a *R/mdp.R
a952cd0c2a2c62d02c60c0a76e57f455 *R/parentIonMass.R
5f1b00772c810752b08e5ee4e6793a5a *R/peakplot.R
c36eba240126b1af709dad766791c406 *R/pgImporter.R
15ae159f85652a791453d182cc29bdb6 *R/pgLFQ.R
1bdb82885d61c7ee79332a277f5a2220 *R/pp.R
ca35c56c0c379f292f8fab68b3a19f61 *R/protViz-package.R
0214245abfe46ed9ac5ba350fe494ba6 *R/psm.R
6e868aafc3269729b709119825b68f5a *R/ssrc.R
7593968ba9533e62fd8c752f2a8c01bb *R/sysdata.rda
453599cfa3c359046e3e78e0c569ed99 *R/zzz.R
ee30bc03f2ee7133b4bb31e5661041a0 *README.md
094dc28a98fdb60e4676bde92c49e6b9 *build/vignette.rds
a4b835997fe3fe64238836eb5d979742 *data/AA.RData
a7d9cde11a9f003614841335f8e079e5 *data/HexNAc.RData
ce174ecc08dde8c7e9a20f639f366228 *data/averagine.RData
d508e0a9c898d0ae1334844776f38a24 *data/datalist
d587791a5c9d55fbf7a618be3d5cc75a *data/fetuinLFQ.RData
601922c525f1b02d7f3c2a3b33a43ba5 *data/iRTpeptides.RData
bf9c18b97846ca3619b7ceb5b2e46cf2 *data/iTRAQ.RData
8450919282665051d39daabe6aa183a9 *data/msms.RData
40467c3fd4bcc9388f58320db2e6a94d *data/pgLFQfeature.RData
d25756525079de04b8287ff934c8bd5a *data/pgLFQprot.RData
c234dff499abc2d9f61c97e3d7c4bf40 *data/pressureProfile.RData
daa9c303936ebe822c0bfbebf6bd6733 *demo/00Index
d553d739fc6b78566ed04444d0a461df *demo/PTM_MarkerFinder.R
f45c1b16c999f2c36134eecadb373909 *demo/peakplot.R
e8e6de925245a465d2ac421ee0628597 *demo/pressureProfile.R
cd82da9cd5a71337020cd26e87376f2c *demo/quantification.R
2e96a497a8a8a6c6f07acbe14f30ac92 *exec/protViz_annotateSpecLib_with_protID.py
670d6468c76929c27cc04bea7df18825 *exec/protViz_annotateSpecLib_with_protID_split.bash
006d9ad3aca2c547707fb572255bb9ad *exec/protViz_bibliospec2RData.py
386ed045a439e0339d35262e9d719450 *exec/protViz_dat2R.bash
ca2fe9383a60b3c8a0d63481dbf38f9d *exec/protViz_extractPressureProfiles.bash
6e56290871832dfca27d85b031322397 *exec/protViz_fun.bash
7c4f3c80da1c09aa515923b10fc65776 *exec/protViz_mascotDat2RData.pl
61612465d8709a41239b82546bdf8876 *exec/protViz_mgf2RData.pl
d5932728a7471906051bf56294d7965b *inst/CITATION
08d138ae6eb699915e169bf84192a420 *inst/Dockerfile
915fe1531fb297ba52f79c19a5858e2b *inst/NEWS.Rd
a15942351a7fbebc2e462b34f080675b *inst/doc/PTM_MarkerFinder.R
78d6ea0cf257ce0de52a7e0e572e5444 *inst/doc/PTM_MarkerFinder.Rnw
18a2f637c3ffa237430e06b2da14cfaa *inst/doc/PTM_MarkerFinder.pdf
1077d856468f1626727e23f4adec9731 *inst/doc/poster.R
b9f459b087315e2178bd023239a46bc4 *inst/doc/poster.Rnw
a6c0e3a991264ead7d445d71c49a2390 *inst/doc/poster.pdf
e2e682047a357821b447f5ad1a50735a *inst/doc/protViz.R
2cdf40e08b09c506767515f22dc91774 *inst/doc/protViz.Rnw
75ca9304ba5f6f69a6b0f0ff7be0f3b1 *inst/doc/protViz.pdf
e47ee9f6542f2ffaee664e2d649cc401 *inst/extdata/P12763.fasta
4a55f4abeb61c0d63ed5021ce15e03f2 *inst/shiny-examples/PTM_MarkerFinder/ptm_marker_finder.R
a292341302241cbf4ffc1c19e8851771 *inst/shiny-examples/PTM_MarkerFinder/server.R
7e8f140f1fd700e80d4df94cbf8bce91 *inst/shiny-examples/PTM_MarkerFinder/ui.R
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e542dc61984ebeff2aa64d3b6a41e99e *inst/shiny-examples/atuth/ui.R
c842585df78eafd3aa6d7da07bebdd04 *inst/shiny-examples/peakplot/server.R
2dbcf913fcbba0e31480b14447b181a8 *inst/shiny-examples/peakplot/ui.R
43e0ca2ed4068a2e676d87103611deae *inst/unitTests/test_aa2mass_main.R
77ec94c4f0e76139a081e98a27a1c5fe *inst/unitTests/test_aa2mass_main__verus__parentIonMass.R
160cd629849a1f616b961a0c51a9555a *inst/unitTests/test_deisotoper.R
d3f4b8cacddb8d8ca9e2f4a7b9b5f24a *inst/unitTests/test_fasta.R
8020a898ae401e6604de8f22f669597f *inst/unitTests/test_findNN_.R
b3fd9b4c5437d1b6e94e66176440d0ac *inst/unitTests/test_fragmentIon.R
3e54b239107ead34b9c31ad712f05c44 *inst/unitTests/test_psm.R
673d3bce87aca3d55d91658956a5fb21 *inst/unitTests/test_ssrc.R
9e862547b1dfb45463a1e03e389b8361 *man/AA.Rd
7c991c49284819c1e7e26fb98c8fdd50 *man/HexNAc.Rd
80a8597c9269a28dec428c005e85b5ea *man/PTM_MarkerFinder.Rd
23b1bc60ffd8529d3e8041b787656e99 *man/PTM_MarkerFinder_util.Rd
43308db08c425924502856cec0ab200c *man/aa2mass.Rd
489d35474a3d7cada544fe83b0edcee4 *man/averagine.Rd
b164fa16c5abdbd02328de98905ef623 *man/de_novo.Rd
73f831a090be3033cd3a452a44067663 *man/deisotoper.Rd
75238af541073bbdbdb7f6d304cb2943 *man/fasta.Rd
a61b49e4c574c28df134635ad3d3b0a3 *man/fetuinLFQ.Rd
a8b57d712619f0d74401f707bc6e0c44 *man/findNN.Rd
dd708089db483afe690c93a1b37670f0 *man/fragmentIons.Rd
3f2228152c2bb7caff29ea9e450bd78c *man/genMod.Rd
17dfd02637a460a2a333f75ca66e594c *man/iRTpeptides.Rd
2e31ca5b84385e4b4f73073444a22cda *man/iTRAQ.Rd
c849ce9d6aaac21264721286b0a618b1 *man/iTRAQ2GroupAnalysis.Rd
9ed87aaeae888c99d5ad34b893bdd6e6 *man/lcmsmap.Rd
4abb0c7e7eafc955212120755c911cb2 *man/mascot.rd
71c22b57ffb7789db6cb367f1e084d80 *man/mdp.Rd
3fa37904e15542a9d8047313c354b249 *man/msms.Rd
fd75f35f293a0e62ec5a2831daa3fe95 *man/parentIonMass.Rd
c76406cae65900285f77fecd7886417e *man/peakplot.Rd
a41003b07860d285e922dfbfaded7fff *man/pgImporter.Rd
94216a2c8bdf765e9c6a2acb305101cf *man/pgLFQaov.Rd
90160c4ae4961414e36744d72b8f83bb *man/pgLFQfeature.Rd
d5868088a1788699f969461527899b27 *man/pgLFQprot.Rd
57487772317b6f64a97db714173e7cb4 *man/pgLFQtNpq.Rd
8cee211c76eec2b80625377908f9316f *man/ppp.Rd
e73d6869e195acbe8c372b2213772f3c *man/pps.Rd
4ca6d1cf44e7392671a03781f3887f2f *man/pressureProfile.Rd
e2fd6497f006c1236fc15809e5a45996 *man/psm.Rd
6428b161f724f4d700eb7e6e128f3767 *man/psmSet.Rd
94a4430ee28b2091305d735a831b9763 *man/ssrc.Rd
39e37fef4a781a5fe43fe4cabe7748bb *src/Makevars
37c32a94db70d3e4cc5b77ce8792449c *src/RcppExports.cpp
95839cb7a54933126578c8e51313b81a *src/aa2mass.cpp
7ed16d8640f6152e015319c911fb3a07 *src/base/chemistry/iisotopeenvelope.h
efae8513d316cc1b04f373bb921823cc *src/base/ms/deisotoper.h
77986b618519e5e1c413a7bca8040378 *src/computeFragmentIons.c
53b2688824c377621e1b8ae2b24afcb4 *src/computeParentIonMass.c
9007e5c3aba69100c454693baa6ff556 *src/deisotoper.cpp
a8d7cf74f972a23cb003880b0b219ace *src/fasta.cpp
77cb4156a7e582e8756f0888f8e266bf *src/fcat.c
08a003e33d958ec8931094bae2b8da20 *src/findNN.c
ed9d181a227a62876570b7a7be5c7324 *src/findNN_.cpp
2e35dea87627fbfa4bbca0cd161be4d8 *src/protMass.c
9e97bdc56ad6b63317b2fdf415ab59e7 *src/protViz_init.c
75f3ba46f2e925198b12edf3a8d73f5d *src/rcppdeisotoperenvelope.h
42adb67f2cafa7634115ec6edcb8454d *src/tryptic-digest.c
e588ec0224c1f42429555e1958365ff8 *tests/runTests.R
78d6ea0cf257ce0de52a7e0e572e5444 *vignettes/PTM_MarkerFinder.Rnw
a6354dfd36a92d4cf246a3c9df060205 *vignettes/graphics/FGCZ_Poster_Header_2014.pdf
e94d8d0408e37cddde28cea82e3b6088 *vignettes/graphics/protViz-concordance.tex
b9f459b087315e2178bd023239a46bc4 *vignettes/poster.Rnw
2cdf40e08b09c506767515f22dc91774 *vignettes/protViz.Rnw
612de36ede11fddefc82ece52f3158a3 *vignettes/protViz.bib
