c02dd119a7b40265f95e8349a214a818 *DESCRIPTION
c7462a323bcee1fe441b00dd233ca5fe *NAMESPACE
1687d7ecd9c027baa00a3a844cb351a9 *R/rbamtools.r
39f6b7c533813674aa7db373ec4c79ed *build/vignette.rds
19a79c3c9b1561bd20b54c221469a112 *inst/doc/rbamtools.R
ee0dd6a4a55d7b3e55112504ccd42e12 *inst/doc/rbamtools.Rnw
307379bf4623f63b96b4c7cf10994fbf *inst/doc/rbamtools.pdf
70636a08b868d8feda7dcb0ad4fd7d7b *inst/extdata/accepted_hits.bam
e402625fa157476dfcd67273bb0f7384 *inst/extdata/accepted_hits.bam.bai
6927ec49f8bf9cc7316d95eb131dfda8 *inst/extdata/test.fastq
9f9521ca552499cb83c6f94f13ca6ede *man/alignDepth-class.Rd
6ab922048f9db7b14b34dd43ea4eddb6 *man/as.data.frame-methods.Rd
379d210fdb35501b6148b10a950ae36a *man/bamAlign-class.Rd
026d965361124fe08de4a3ed29befccd *man/bamAlign.Rd
834772109d6ed6bb079c0adc90241a25 *man/bamClose-methods.Rd
b1339f74df204cf8e62082dee23861a0 *man/bamCount.Rd
60c7dc4f114339a85fa3d5bc30afd908 *man/bamCountAll.Rd
ac27e113cb475abcd0e3b38524bd2134 *man/bamGapList-class.Rd
f49636d06e63579406a31f6afebd0259 *man/bamHeader-class.Rd
38d5360cb908c6907b17d1d5844a477a *man/bamHeaderText-class.Rd
4ef6283ade9bac4c3aa6c66b04821ba4 *man/bamRange-class.Rd
0d5bac29c05106927fc9e1ec560b7fbc *man/bamRange.Rd
105d7299596492d5b232b5797540f5b7 *man/bamReader-class.Rd
03c9354d0c9cd87f5d65a5e9424ea7c5 *man/bamReader.Rd
6c4813e62d97dc403177441f3285ff49 *man/bamSort.Rd
a855d466c1092a2b15205d54b696e59b *man/bamWriter-class.Rd
5aef231134598331290b4b82935f2622 *man/bamWriter.Rd
3ba4da468b777f457040a8e10b7bb05d *man/countNucs.Rd
ca79a0b147641bbafd4af13c8692f399 *man/countTextLines.Rd
0ca5708b364847f0dc7913787d072d9a *man/create.idx.batch.Rd
2b3b3958bd28432ff1ce9efddcdf59b9 *man/extractRanges.Rd
d02d631ce7033fa6ee91860508aa10dc *man/filename-methods.Rd
1c94813fadb9ec2ea44566bf6f091dca *man/gapList-class.Rd
8aaf0041ada580dc94b04431c627ef54 *man/gapSiteList-class.Rd
854d9cca259f648a0314383b6b1d1634 *man/getHeaderText-methods.Rd
8f00edaa0cb70c9a4381df8971fec4bd *man/getNextAlign-methods.Rd
a98bacf41a931688815219046aa73705 *man/getQualDf.Rd
8da858769f7aa297d458063c61759458 *man/getVal.Rd
ed88cdfa7a2aa82995daf3100a13184d *man/headerLine-class.Rd
e746e233be84d9ca887d3f5dcd81bead *man/headerProgram-class.Rd
5a0f2d835902efb80b9669e0a4fbac7d *man/headerReadGroup-class.Rd
a0980a4317e856c779589bd9d2a86794 *man/isOpen-methods.Rd
ab7db0858ad362a9378c9397e20eef02 *man/nucStats.Rd
e6fb0f3637c467dd1e71ed8b43b4f82c *man/range2fastq.Rd
a5079809632da686ade8b4f22b08d3e6 *man/rbamtools-package.Rd
6609cee73dba1f67ff87c8e87be9cef7 *man/readPooledBamGapDf.Rd
911be680cf9a4fb08c6ae3bcdf02291c *man/readPooledBamGaps.Rd
b780f74ac9fb23124f06cf7a365bd7ec *man/reader2fastq.Rd
9c222e0b4daa9244c8100bb28d26a8a2 *man/refSeqDict-class.Rd
53a6daf94a6e50d2f4107c063de807ce *man/setVal.Rd
51c68a014632ce422e9ae16504793e96 *src/Makevars
b2ab8d847907bfe5f92a3c04cdf4d2a0 *src/Makevars.win
47515da526879b45910caaba26f9b3b3 *src/align_list.h
e76c784e0e1fa1842e8dff98b8af887b *src/bitmask.h
58c44dc5280e8ef50d31ff9841a0d6e2 *src/gapSiteList.h
40b375ddf31af4d2f266c6975e87fc5f *src/gapSiteListList.h
33f78354ae2e3210a806131726c2b326 *src/gap_list.h
7b8606aad421cf07fe3f8313b32251f0 *src/rbamtools.c
e1010ff87e2a407ba12da6f3cc3c3d9d *src/rbamtools.h
2e4c02f66ddf5b45e5f82ff579740386 *src/samtools/LICENSE
e7c7d3655f3ae26a36174445a10a9c64 *src/samtools/bam.c
bab443d05d507bdf0fb84b371f13cfef *src/samtools/bam.h
4447600988461806cf79665a5cceb757 *src/samtools/bam_aux.c
d13da405ad6b6f5a284549f7fdc2da93 *src/samtools/bam_endian.h
a605ddd433f378888074926c8bfa6a0d *src/samtools/bam_import.c
e35251f9c0419cec26e93a97c6fb5b61 *src/samtools/bam_index.c
591a919c86826a2e1e0090f7c9480195 *src/samtools/bam_sort.c
e97b23fbce5dc61c969bfd5bac6d5ed0 *src/samtools/bgzf.c
4f03b6e6902f9ff80ae153989a049573 *src/samtools/bgzf.h
eec1f42a7bd9379309b1b4c69511227a *src/samtools/faidx.c
4cb1218daa2c840cf4433f75ed1fb63b *src/samtools/faidx.h
76fdbca0ea88e0a0d62bc8d01d0fd549 *src/samtools/khash.h
8500accbbf061489d561417f44e45b7e *src/samtools/kseq.h
8965fbb1b69791ece90011c111d6b8b8 *src/samtools/ksort.h
7fd7e5f5701b912345a4005add5076c1 *src/samtools/kstring.c
d92fdfed54bdfd952d7d18e1e1828a59 *src/samtools/kstring.h
64e06b3ed01d8e1b4da691f6dc6f362f *src/samtools/razf.c
1c3fc6da9dc0c7d4bcc3d3603bec519b *src/samtools/razf.h
3b22d4e86d6c5e61f07c53163d588ece *src/samtools/rdef.h
b280cbae062bf0af39ba4299ac0d33f0 *src/samtools/sam.c
eb06482d20c8cbceead50f119c2a0229 *src/samtools/sam.h
d825fae276719c1f549f171c91f41f6d *src/samtools/sam_header.c
65a9cf0435d3083a031a214e7fe82642 *src/samtools/sam_header.h
ee0dd6a4a55d7b3e55112504ccd42e12 *vignettes/rbamtools.Rnw
12cf02a55ccb202a363ad51c771d51cb *vignettes/rbamtools.bib
