d099473ae2bd4344cddd0baf69b0ad6b *DESCRIPTION
23fd1b598fecdef0ce1ee519753255a1 *NAMESPACE
f61858fc21618dcc4267e81e9fad248e *R/DESeqWrapper.R
1500b6daa8e5b2d3a554ae311ed1d27c *R/calcBasicDE.R
6fd1745c40d400bb742f6ade8e49ecdd *R/calcCombVals.R
f95d08d9b6957eaec2d0cceab4efbab2 *R/calcHornMatrix.R
4dbfc7e68acb446370ee395cb9654f9f *R/calcLogVal.R
deffdec27a7af724e7c4e53078f30337 *R/calculateThirdPosBias.R
845dc82e8deaf17c2df0cd7294c56208 *R/determineSynonymous.R
fa2802075b3860cc1ec016b8d6c917b7 *R/heatmap.mark.R
a3620136a2c0259e8afce2bd7a4593ae *R/kaksFromVariants.R
a45f109c99caf7d5d839644ad01a2cfb *R/mergeCountFiles.R
b0c54ba8f3c00a3b4bd2f6f90ff2631a *R/nSynNonSites.R
6889df1cc4c06eb72ab3dbba132a19ec *R/parseVarScan.R
e06aae16f88b04fdb3c6221304417a2e *R/plotDE.R
4c517901fe017e478563e025972b4a9f *R/plotDispEsts.R
2121e5f94f35d97ddaa4100b6b712e79 *R/readVariantFiles.R
bc8005007d70fab651ecd6e5e042259e *R/runGOAnalysis.R
1bd3a5470d62dcbabc1c8998ffc559a0 *README.md
8933b36c76f96c0c932e5b5efadbcfa5 *data/datalist
2022dfde6aebed6fa4639e1611d838e0 *data/fastaExample.rda
34e230d34c57ab51afa9725b0f166563 *data/female_1.genes.results.txt.gz
087bd88ef5d5c420efcc0f429d3df434 *data/female_2.genes.results.txt.gz
de2e41dc4a3230b941a544e80fffe4c1 *data/female_3.genes.results.txt.gz
4793d9316e98b9be805973b9b5da2769 *data/male_1.genes.results.txt.gz
be508490dabcbfd8e1afcf3c3a832a6b *data/male_2.genes.results.txt.gz
3d869a3ced46ea6111ee5532912b6d64 *data/male_3.genes.results.txt.gz
40fce7f54d2fde65cd7f9cda55f9a79e *data/varScanExample.rda
2b09614057bb44815954c008e3c6d663 *man/DESeqWrapper.Rd
00ff5e53331244f22fe6b8b6f38ce90d *man/calcBasicDE.Rd
7703caeff0f033a58f248c889e174a05 *man/calcCombVals.Rd
b5bfc4efbabf5159680b8fa43c25cdaf *man/calcHornMatrix.Rd
441210be0c95a51dd3b081d447fb06c4 *man/calcLogVal.Rd
7cae15c2b9620f6da1fe0ff65a2a6e8e *man/calculateThirdPosBias.Rd
5aebcb8edb3c4b8449091898ab5c7043 *man/countData.Rd
258424ed7dcf55aa12c4f909886d4f31 *man/dataFile.Rd
dada4b81bba84dec630cf03b71c3cd2f *man/determineSynonymous.Rd
174832c33577215a8e3894de4a110ff4 *man/heatmap.mark.Rd
7fc98ba81d18397f8f5a86d15c00294f *man/kaksFromVariants.Rd
14bcbb29d540a4f51b015063bf6c469c *man/mergeCountFiles.Rd
0eaaa64f7b724c562fd8d65a57f313a4 *man/nSynNonSites.Rd
53b12c6684381832edf9cb21883ed199 *man/parseVarScan.Rd
8fffb65c43797e2f8e742f0fb7a25ecf *man/readVariantFiles.Rd
8ba2d1b8b56c24268c3a38edca00c542 *man/rnaseqWrapper-package.Rd
1982da533dc023c50527612e90b0b044 *man/runGOAnalysis.Rd
