1002e9f8f3fdf6fc46984c5c926a90f6 *DESCRIPTION
a70385c8584628e4d79e932e2e230959 *NAMESPACE
3ae47ac680e1729137fa97cfdad03b8c *NEWS.md
607ca08ce9018b9d165030bed8581a14 *R/alignBurstSeq.R
161cd4103ae9a1b65cd3680ed25e59c3 *R/applySync.R
17c606454f4ca345abdf1c7219067f36 *R/checkInp.R
4d2dc025e6968dfd8eb59c865786ea53 *R/checkInpSync.R
6b1f49dce457ef9c1dc11bcfc849b95e *R/data.R
f2edf114039697903547a84d3660e0dc *R/fineTuneSyncModel.R
6cd0ee097dcbe0433ea1b179a7ab7f22 *R/getBbox.R
5b227dd1bc46b829de85e5b1eff5d5a1 *R/getInp.R
836efef8768bb8bad2c25f114067838d *R/getInpSync.R
d74960f57fe83077db534cd9bf3679ee *R/getSyncModel.R
634a26d2eb1379613c184736375f3d4d *R/getToaYaps.R
e1a2354a0ab769a0f08e0b4908da06c5 *R/pkgHelperFuncs.R
d02aff2b0cef6de30b58ab57cb8f7862 *R/plotBbox.R
f084ea5a70cfa542a855eca9fe980e29 *R/plotYaps.R
58a989c002d16e11410dfa72f3d58988 *R/prepFiles.R
0d6ceb9b72f87823efdbacd5bb969671 *R/prepTmb.R
53fece80e4222a8a560ffc8dca57ae05 *R/runYaps.R
54dd7b0231b60b90114fa6d4542592eb *R/simTrack.R
c04a6ff65a62ddbe88f182713c9885d6 *R/syncGetters.R
f529b0f6ca9b2860b31f4c303146770f *R/syncHelperFuncs.R
b73f4a87f46146da16d3d2d55934d198 *R/syncPlotters.R
a38f72757b8d49931da355aff0d4d372 *R/tempToSs.R
6bc646d9600828adb400db04f95df5fa *R/testYaps.R
a1b69ee73cee607c8be4750134efc515 *R/zzz.R
fadc6ffd42d090b6ce75ca9edd523b18 *README.md
74fefefb96b501dbed29b4892365f091 *data/dat_align.rda
5fb7e598615561a03ed47146edfe4061 *data/ssu1.rda
95f1a8bdf4bca44695a1fb1f14a8fc2a *inst/CITATION
e07065796c28aef057eb85caea53be8e *inst/extdata/VUE_Export_ssu1.csv
eccf2f7ad072633756e87fb149838c0c *man/alignBurstSeq.Rd
15a8b0515ab66f2ad3ce73ab4c6b7a76 *man/applySync.Rd
b909e16c09fc19de16795c153b46811a *man/checkInp.Rd
970cbcde9455781bb24b6e0d24d5f2ba *man/checkInpSync.Rd
ebd06a5d5057052a8d5176370537a7aa *man/dat_align.Rd
74ca740242ad15cfb18496a435b4947f *man/examples/example-alignBurstSeq.R
899afc53ebe826d68dca5bd246ba4949 *man/examples/example-bbox.R
18dbfec672c8082cf847b618fb3e1fd7 *man/examples/example-plotYaps.R
fb3894fe4e4d2a24bf03eaa65e6e6c5f *man/examples/example-syncModelPlots.R
cb01175ffebb1957acf2fcb6014a6c24 *man/examples/example-yaps_sim.R
0f9a50439338f1130b043707fd6fb3d9 *man/examples/example-yaps_ssu1.R
cacdc01ab4e5dd8bb4545db5cc3fa4a5 *man/figures/README_sync-plotSyncModelCheck-1.png
ecda9e31674cefddc6f3aa7701831dac *man/figures/README_sync-plotSyncModelCheck-2.png
0d5c95ca27501ce8c9dc0a70b9b92465 *man/figures/README_sync-plotSyncModelCheck-3.png
74be22c28f1f0a0fe73ece3a938afac8 *man/figures/README_sync-plotSyncModelCheck-4.png
ea2332cf002954303ae73b9b80a7034c *man/figures/README_sync-plotSyncModelResids-1.png
cec6c5e1304c2beeb991a0acd398ece0 *man/figures/README_sync-plotSyncModelResids-2.png
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8de0ea561d2ef1a9fbc1a639797643d7 *man/figures/README_sync-plotSyncModelResids1-1.png
a7b211595ffa285f515ea610b6c15252 *man/figures/README_sync-plotSyncModelResids2-1.png
b1dc7aa964c8de29028f5968b4ac5f36 *man/figures/README_sync-plotSyncModelResids3-1.png
9c7c6aa47e5efdc9af721a384018f55a *man/figures/README_sync-plotYapsOutDetails-1.png
ca9febd67be0f2363995d13c6f584ab2 *man/figures/README_sync-plotYapsTrack-1.png
5003459b145d4d2d1d4bb012700f986d *man/figures/README_sync-pressure-1.png
7e6a7f8488f29af940c361d91397dff2 *man/figures/README_sync-runningYAPS-1.png
abf2f7a926a28cd923640fd3fbd5855c *man/figures/README_sync-runningYAPS-2.png
baf59d39f00a59300aa5768c530cbd3f *man/figures/README_sync-runningYAPS-3.png
b5d4d210fa5c413304113910f63d9849 *man/figures/README_sync-sync_ssu1-1.png
771ac0ea69e3b0f96b02d89c3744e4b2 *man/figures/README_sync-sync_ssu1-2.png
a9c1628dd27203e520f8006fd02e5be9 *man/figures/README_sync-sync_ssu1-3.png
e31e56c85c51db6ce41ba095e47cb35b *man/figures/README_sync-unnamed-chunk-2-1.png
288b5d0e92042ce573dfde6fb2c7dca3 *man/figures/README_sync-unnamed-chunk-2-2.png
d1aa235d32267714126924a9e0be683b *man/figures/README_sync-unnamed-chunk-2-3.png
649f4cda15492eeecac56eab246f98c7 *man/figures/yaps_live.png
b0d63f015d4833becb398f6d371fe9ee *man/fineTuneSyncModel.Rd
fcfb29d5783a39618d94f39eeb87d81a *man/getBbox.Rd
efa06c185d6f59aabd41929d6286449e *man/getInp.Rd
2aaa2806c98ecb90c03a62ec8e4e0d36 *man/getInpSync.Rd
50c33534e3d2275a75e14129bc1bd66e *man/getSyncCoverage.Rd
13011a9d615a7f0d117e0bc5c548fb7f *man/getSyncModel.Rd
53dc243ffd27354a2dcd50814e57339a *man/getToaYaps.Rd
840e848b7f6231722d392c833547d10b *man/logo/yaps_logo.png
580950a15534c589625b8a81b472429b *man/plotBbox.Rd
27bd3b6f3a3db46365001630e67c5b16 *man/plotSyncModelCheck.Rd
dcaf69054d20c50ca0f7403ea6516c63 *man/plotSyncModelHydros.Rd
8a06708d4e1216e5647fb40eaedf845a *man/plotSyncModelResids.Rd
820b085c215bff823fb7d110317f1933 *man/plotYaps.Rd
e77d21cda961ee3b5f3855f9f5bcc973 *man/prepDetections.Rd
e020a645da28815acc5d84e53982cb3d *man/runYaps.Rd
0d6ac87233b7dae95d43f4a5ac4763a2 *man/simHydros.Rd
05747a37d56a75addc29eb57e4cf944a *man/simTelemetryTrack.Rd
5c8537cf16028fd61744c2d83553349a *man/simToa.Rd
e391331d604329eea26a9aebe5174f5e *man/simTrueTrack.Rd
3ddc9be1d331036e4af77701f32d0047 *man/ssu1.Rd
dd1fe983b8042f3a7aa5eb5340bfa892 *man/tempToSs.Rd
ff251b7f08064f7ddc197fc8574697cc *man/testYaps.Rd
57dfc17ed174d47ca624bfa10489da93 *src/dist_mat_3d_est.h
04dbf34af8a1be89270e1176e3a784ec *src/nll_bbox.h
7bfcc8e5558f87bcfa6c7a14d30b945f *src/nll_gaus-dist.h
75fb9166e2a8902e5b772f5952cc63fb *src/nll_mix-dist.h
7e328d0cb4b3e2c2251d10fb98a10b45 *src/nll_pingtype_pbi.h
d932c4528d79c6ac2019b06130b2385f *src/nll_pingtype_rbi.h
63073968f3d159cec5f57b22049033ca *src/nll_pingtype_sbi.h
d689b27723969c8b2ab52c4432c160b5 *src/nll_pingtype_sbi_double.h
23dd8d42ed1a797bc16f17ff292639de *src/nll_ss_data.h
6e77947cffdd9849947ffbdcb685de9e *src/nll_ss_est.h
6ab85470bb0439f0258cb33e1bcbf8dd *src/nll_sync_ss_data.h
2556bbdd62f016e7cc6d7a4519c8da29 *src/nll_sync_ss_est.h
120dd956596acfe0a6e23157aeaf0840 *src/nll_t-dist.h
fb2d65c7bda4ca1b48144c514a5ebafe *src/yaps.cpp
d3b5f4957a02738a7307504b9c088153 *src/yaps_sync.h
1c8d2c606ccedd26da881b39fb4d98b7 *src/yaps_track.h
a46cc250b605bf4dbf7cac1feac488fe *tests/figs/deps.txt
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3f199473905875cb7b145992336d5be5 *tests/figs/syncmodel-plotters/plotsyncmodelresids-temporal-hydro.svg
f56d1881600fb7e273c7be807b00614d *tests/testthat.R
72f205c0730bb5fe7f95708ddc56a17b *tests/testthat/aligned_dat_ref.RData
012390b9b3f750eddbf606dd07645106 *tests/testthat/sync_model_f1_ref.RData
c485255e803c1b4b7bf54eee5480b86b *tests/testthat/sync_model_ref.RData
825c46745f20930f562809200a2053b7 *tests/testthat/test-alignBurstSeq.R
59282fedbbb7917285dcf080225103f7 *tests/testthat/test-getSyncModel.R
32d20102f24afaa107c4873a700e25ad *tests/testthat/test-runYaps.R
a09dcff59d43ffb782d1364e3aaa5688 *tests/testthat/test-testYaps.R
934bb2f74b429579b2255f33681b34af *tests/testthat/test-vdiffr-syncPlotters.R
7d57f3a33735a1daacd19b2929381e1d *tests/testthat/test_out_nloptr_ref.RData
fc2f6875f7237306bddc68cefb37aeb3 *tests/testthat/test_out_ref.RData
ccb66366b1606d09a53bb94cc5646149 *tests/testthat/yaps_out_ref.RData
