f31ccc26955861519a743c4172e77172 *DESCRIPTION
93e88e4e9a5aab18ac00ecbaa549814a *NAMESPACE
893b19ae5983b949165c93ec376faf9f *NEWS.md
c260e8f4416e527acb145e9f1b4e9ca2 *R/activePathways.r
5103c189b602ec39e3710ac8fa431951 *R/cytoscape.r
b3a86e1d3fd4a5f58806790801b9274e *R/gmt.r
b99c8fa1c848451be1145f1f55366eaa *R/merge_p.r
b354c9b3958135d58ee925cb861a6dab *R/statistical_tests.r
2251eed3cbb7066a6f6a3b44daa80026 *build/vignette.rds
01f3c36eb6d2904bde3ac0f33eb914bd *inst/doc/activePathways-vignette.R
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5eb6eb3246161bf30a13cc86a1d1059d *inst/doc/enrichmentMap-vignette.R
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05f6bd331cd13e227ed5efacc2698eef *inst/extdata/Adenocarcinoma_scores_subset.tsv
cbab74981370b1380c52b100a39f6f40 *inst/extdata/example_write.csv
cd94b018591a1f486f7fe1d848ac2d82 *inst/extdata/hsapiens_REAC_subset.gmt
816a44e4882ce47c8accd54473573249 *inst/extdata/legend.pdf
19433d2f775ee5e4f571227cc55c55d2 *inst/extdata/pathways.gmt
fb372b0a65a795c2af19109049b205a7 *inst/extdata/pathways.txt
127a3678ce3fd9f20de061f6d96fe47e *inst/extdata/subgroups.txt
26cd73ad3215f072217b6301135d53b8 *man/ActivePathways.Rd
771b37b233cd198bcc7762aec24197b0 *man/GMT.Rd
98b83c40c67df69f6d6d8fc1d64eadf2 *man/brownsMethod.Rd
41d00b81801f183126453b4eb22d1ff2 *man/columnSignificance.Rd
e869116bee551c0b79a3df2a3ed36407 *man/enrichmentAnalysis.Rd
87f5c52677822e67bbf79354c44a8647 *man/hypergeometric.Rd
9c09f514ad060b1fe7fc4c21fa3e5e01 *man/makeBackground.Rd
b3cd044f03213ed6cabefa75b080c3ca *man/merge_p_values.Rd
963b278bb65da871876a35119078e899 *man/orderedHypergeometric.Rd
7adbb017b3afb0b29a38fbca515318c2 *man/prepareCytoscape.Rd
4be2c38c4bbf1a60ca086db42ecf989a *tests/testthat.R
91cfed96a63b787a0a6befde3717e513 *tests/testthat/helper.r
213456ab34fd4e42423500763a0a3005 *tests/testthat/test.gmt
c01ecf8029c934b6413b85c602a226ee *tests/testthat/test_columnSignificance.r
ca2f564a386c2304c7ca25270bc4508b *tests/testthat/test_cytoscape.r
9446861f4756a8e86e805bbf4c931944 *tests/testthat/test_data.txt
b94efdf88edf9ef31747364a47007938 *tests/testthat/test_enrichmentAnalysis.r
cffc2b352aeef449e197c282619856de *tests/testthat/test_merge_p_values.r
d5db648c1455c47313fc3adaa0c4fb07 *tests/testthat/test_orderedHypergeometric.r
dcd8a3ea51ba88122b513b032f99a9b1 *tests/testthat/test_return.r
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69d3bc1bd4676d4cf36fe9ee8e13a9e1 *vignettes/Step2.SimilarityCoefficient.jpg
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22ad2071583668f3f964ea9c1b16a847 *vignettes/activePathways-vignette.Rmd
533950015fafe75fe567f51de5d7b3fc *vignettes/enrichmentMap-vignette.Rmd
daa48bd6e831cd1b77a88da88fea7b30 *vignettes/gmt_download.jpg
b486770b3c7099f4e8bfd219cbb74062 *vignettes/legend.jpg
