c50de7cd59ecbab4a8932a197fb439ec *DESCRIPTION
1580c9622cf3b25836caba3dec04262a *NAMESPACE
e385a7de9f1766b098cc1ab8dcaebe8a *R/brundle-data.R
7ade0a976395eeef9c7c68c79bf10a17 *R/brundle.R
112af944c71341666136f93b83850aa4 *README.md
ce7e346bfcdac9b2be16fee46231796e *data/dbaControl.rda
1709a2926676451b6637a99309da0a9f *data/dbaExperiment.rda
d142f1457c7dabddf01ac3ff3d2a4a1e *data/jg.conditions.rda
577b815199eebdd6a996c7aadddb2b18 *data/jg.controlCountsTreated.rda
248cb3c05064447960dc2ee110cd8274 *data/jg.controlCountsUntreated.rda
be901c7b0fad82a0b30449c6f31feca7 *data/jg.controlPeakset.rda
2b1c7c139f4b6bec93d8677a2de7096c *data/jg.controlPeaksetDeSeq.rda
85ba44e6fe6a82af74790575698f796d *data/jg.controlResultsDeseq.rda
5931183d18df4ef5e60f1c28d2fd1142 *data/jg.experimentPeakset.rda
349e8db0b6b872e6156f7efc0f3745c9 *data/jg.experimentResultsDeseq.rda
37cdede7b2c65c0dacf6a26ff6432ef9 *inst/extdata/samplesheet_SLX14438_hs_CTCF_DBA.csv
8979c16871994f80bebef27b9bd63ff0 *inst/extdata/samplesheet_SLX14438_hs_ER_DBA.csv
a33197858b1aa408d3597713cdf09074 *man/Brundle.Rd
80308ac0c16d92737b08e2ef8062b646 *man/dbaControl.Rd
33ae928c95fbea8a162207e1d75fb729 *man/dbaExperiment.Rd
debcc3c0187f1551f204e312fd13398d *man/jg.applyNormalisation.Rd
4e9b9046a88092b496989ac012c42119 *man/jg.conditions.Rd
6de2e93e1f66bd4b8186d2e77db91dcd *man/jg.controlCountsTreated.Rd
b756187ec576bf31349aa54e2201bf69 *man/jg.controlCountsUntreated.Rd
46821720c2b973af76171ce9841f5d9e *man/jg.controlPeaks.Rd
1e777ddd4bd67b4dc59887ea1c08c426 *man/jg.controlPeakset.Rd
d519443767595e179126d4eeb42f199b *man/jg.controlPeaksetDeSeq.Rd
ef61a79c831cf1357de2ad392cafca46 *man/jg.controlResultsDeseq.Rd
b087078d3f46f3507716b0e4c09c86fd *man/jg.convertPeakset.Rd
bf8346577d9bd5e4627e562b49ee9b69 *man/jg.correctDBASizeFactors.Rd
a7f2c7393caa3460434ef3394c98d5cd *man/jg.countAlignedMReads.Rd
6bdb094d17a1932f0999b2679166f856 *man/jg.dbaGetPeakset.Rd
83f829a2fedcd6433bcc79f4cf8e0cad *man/jg.experimentPeakset.Rd
c9def0a2e11cac28b10b0f072ed55ff6 *man/jg.experimentResultsDeseq.Rd
91854db78227393d9c313d7e2b17a1b6 *man/jg.getControlCounts.Rd
e93afc5267546619b542df4a363a3365 *man/jg.getCorrectionFactor.Rd
05e57364e0646510c05198f6efb5dab1 *man/jg.getDba.Rd
29fb7a7e0c4ee3069d79871ec66f5e11 *man/jg.getNormalizationCoefficient.Rd
5ce73552142512995f1a541e3850c20f *man/jg.getSampleIds.Rd
cc0cfe0a9a5dc46f088c53be8a2967d0 *man/jg.plotDeSeq.Rd
db8e81b66238e91614e0d40eaeb568b9 *man/jg.plotDeSeqCombined.Rd
e42c7b93cd8d6830629e1ff116ffc6e3 *man/jg.plotMA.Rd
5f3af27d92060ef1699eff5a1942b628 *man/jg.plotNormalization.Rd
e562aa87df29721c61bddc87629d42d6 *man/jg.runDeSeq.Rd
