b3ac69a44df43c44316be3e5c22492fb *DESCRIPTION
b1650c31789cbee325ce160a27f757b8 *NAMESPACE
5a1d7061f74b9d5b07241900ab871586 *NEWS.md
3b24f0075baedcefab509b43b41e5e7a *R/check_cdt_samples_convergence.R
a4c98ca6ec191d71676674143b804314 *R/coarse2estim.R
9f26c5394e70e25ff6cc80a2ddea53d3 *R/compatibility.R
0f43ecc3d490ea4cbff2272a79220757 *R/data.R
405ac7be8e674a490e4727736735ccce *R/discr_si.R
e1ef17d8b60f6d19a057c0392307458e *R/estimate_R_plots.R
bd1b3ed4b0e69659b073e053c7a7fc92 *R/estimate_r.R
70f45d19c248a7f76e041af6ed9ac277 *R/init_mcmc_params.R
08a620b1cdae6e051f12abbd8e0a25ea *R/make_config.R
b9d02bf126a15988e5f4eb147a8cf5a3 *R/make_mcmc_control.R
831c8600312c5171415524f685c4a374 *R/overall_infectivity.R
487efef62ea3e439ce47fec30bac6a01 *R/plot.R
832e706f03a47b7ac65d5530e509f691 *R/sample_posterior_R.R
71b6a214d38ba5035d70f55d8d0cdd07 *R/utilities.R
404024a90665939e5afcf802d319e406 *R/wallinga_teunis.R
ff884e3c9bd6f4c50f2d83e38b2e469a *README.md
8585bfbb7124faa99e26afbcf8c71324 *build/vignette.rds
7f6ffc22a56d9a10582e870efafe8e4e *data/Flu1918.rda
b3e73a08569bb38122b2ac2e6331a5e8 *data/Flu2009.rda
4308a54e1a445117166cd56d24546596 *data/Measles1861.rda
6056b94725ed935ffe63ce3319c143bf *data/MockRotavirus.rda
1740244f5c726f3e6032c741337bdc1b *data/SARS2003.rda
683c2e11d9a03ccb97672f8d03c4e6ab *data/Smallpox1972.rda
1ad04009d9ea6da9596e9dbade961327 *data/flu_2009_NYC_school.rda
c0ce81d9b894719513d1203f4b3cc326 *data/mers_2014_15.rda
8b8248bd5cbe4d9b64058452e063d822 *inst/doc/demo.R
81b2d9389683138b6ad61e60584090fc *inst/doc/demo.Rmd
6f0be5b6fa385c92eced89e1c8849c64 *inst/doc/demo.html
d8514c592ba489ff73e58a4a0fe3f788 *man/DiscrSI.Rd
bfbf85521c9d90ce87b40e6dd7e1e7cd *man/EstimateR.Rd
30a807f078ea0a5790f9c646c78f2e74 *man/Flu1918.Rd
40b3e1ee1dc4f63527156393a8668a4f *man/Flu2009.Rd
375b364a1aadd6f20a71b84e534fb221 *man/Measles1861.Rd
2aa822a2e3de03ae3ddc596420cfea5e *man/MockRotavirus.Rd
97013a37e46ee151c02c7a4efb1e7c7f *man/OverallInfectivity.Rd
5ece481a0aec1813a4ad3651490df654 *man/SARS2003.Rd
b119a72a7493604bf7ed87e05d50968e *man/Smallpox1972.Rd
c3c3770f524fa557622641404f655e40 *man/WT.Rd
8b6096bccc842b2eb13811a5e83026e1 *man/check_cdt_samples_convergence.Rd
dd2e1ed8a12c07e49324b986eefbdaee *man/coarse2estim.Rd
b846d3190c5a12d7e73b8a833eb8011f *man/discr_si.Rd
b89f2d539fed99b4677b088a872022e7 *man/estimate_R.Rd
c3d3275bd5c6e7e1efd03f8c7ef11ea0 *man/estimate_R_plots.Rd
5f8ea7d45e8fa8b92601c8bad748a626 *man/flu_2009_NYC_school.Rd
f24d6088cbea559dad4292a0f8a33deb *man/init_mcmc_params.Rd
2c3030b0744c119479534658ee6d59eb *man/make_config.Rd
9569bf50703fdefea9d1abfea94d112c *man/make_mcmc_control.Rd
c1300bb94070ec1e58f0f01aee197ae5 *man/mers_2014_15.Rd
e7f5972468c6da2d51683c7ed014d367 *man/overall_infectivity.Rd
847f38bf58e44847dde30ee8f4a6bd4e *man/plot.estimate_R.Rd
1f9f6f9a50bd32b43b083027f9821924 *man/sample_posterior_R.Rd
38619b853ceb5a9a1d2c54b5f6475357 *man/wallinga_teunis.Rd
eaceb3bd4a052bd751b8759964ff81b8 *tests/expected_output/Example1.rda
792ea0449633af1b80a94facc00aee52 *tests/expected_output/Example2.rda
1e59d486678904c12f24406f5854fff2 *tests/expected_output/Example3.rda
d44df2163813d2fc0b35afddc2b3fa79 *tests/expected_output/Example4.rda
37455b724fc4126f1b8305cc5c05f444 *tests/figs/deps.txt
cf2c97cdc5251777f32bbb01750a22fd *tests/figs/flu2009-incidence-import.svg
dc9beab62f0271e6307c80c0a96975fd *tests/figs/flu2009-instantaneous-no-legend.svg
6db16f7c86d4779e4246bddd15056cf4 *tests/figs/flu2009-rc.svg
db56ef6bc628a7299d73d292db1ff495 *tests/figs/flu2009-ri.svg
a4cc253cd0d848eb65a142cc94578348 *tests/figs/flu2009-si.svg
911a6159d25e5e8bae3715ba48c31328 *tests/testthat.R
a75bad01e96068da54b2c418bb813a00 *tests/testthat/test-estimate_R.R
e0348a554a8c976703bac70266b01480 *tests/testthat/test-plot.R
a6a04245f0486340c0bf82e675f62c17 *tests/testthat/test-stample_posterior_R.R
81b2d9389683138b6ad61e60584090fc *vignettes/demo.Rmd
