3ea46d31cb230ce79603bafbd6f2d896 *DESCRIPTION
a57292d3a714b05b8a4ba03ce3550baf *NAMESPACE
530c9c2aabb790674ca4ee4a1dd19107 *R/01_ReadData.R
aaac1fe5f0dce3f17291d3954a332947 *R/02_FilterData.R
9e35a4ecc48284b6167d5ff9ade7745c *R/03_RunIntLim.R
95f2e0c2eba2563901a0b0e2bb22e269 *R/04_ProcessResults.R
2dc38a07a05c2abb14100d9b1258c0be *R/AllClasses.R
95d87c20c7d121991c1484f84319deac *R/IntLimResults_extendedfunctions.R
77386f585733bf412736af9ee8e78dc3 *R/PermuteIntLIM.R
20b64e1033c367b443deacb97b9ef785 *R/crossvalfunctions.R
85b8f494b6bee3fff4a16e2b6d59341f *R/internalfunctions.R
141a3b9d074f4c5d90af84d46de44a6a *R/plottingfunctions.R
9214588ce54488afeec2b06bb2e3608b *R/runShiny.R
42753d7465b1eb4d76c76374556b4ce2 *R/statsfunctions.R
e5a03681c1d31ff3c6648d6cff1147fc *R/writingfunctions.R
dbfb6fcef10acdc0c957e379ab32ea03 *README.md
74f21de99aa7c908ff244809965f5c4a *build/vignette.rds
4a3146d2c4588151a38defefadd67905 *inst/doc/IntLimVignette.R
37c3aecc385f16701ab141f49875e48b *inst/doc/IntLimVignette.Rmd
1a85607362b36f016fca62baa8f84bdb *inst/doc/IntLimVignette.html
466875f51242590d8bb1193c0fc8989f *inst/extdata/NCItestinput.csv
ad6d0d1010393e1d5d2f7423ebd39e59 *inst/extdata/fData.gene.csv
fa9c96829a2f8f9a30dfd8c320cbedd5 *inst/extdata/fData.metab.csv
385a82b288aaeb4e0a741a4647fb198b *inst/extdata/geneData.csv
cd9f00e599d0c5eb8dfac13d214c1066 *inst/extdata/metabData.csv
a1f29e6e3971f398305e26b69719466e *inst/extdata/pData.csv
4b958d31cb0bd8ae0e0352e358d37ef4 *inst/shinyApp/README.md
d41d8cd98f00b204e9800998ecf8427e *inst/shinyApp/Rplot001.jpg
f0e25a5cba2e0badea6a321a4ba2f45c *inst/shinyApp/global.R
a4a1e9e48ab8e23546573fc57634172d *inst/shinyApp/server.R
50a3354bd0a751b80746f252e550d389 *inst/shinyApp/ui.R
1b0050f00f3a1d0415673d2ce2fbb84d *inst/shinyApp/www/google_analytics.html
40d604aceefdae8a176cc8d8d23d50fb *man/BuildDataAndLines.Rd
cc9cfc5c14c0250f3041910f072bfbf2 *man/CreateCrossValFolds.Rd
dbe3127aa7126eb6b679300bbce203b8 *man/DistPvalues.Rd
81025e66a9cdb31335adece9819eac30 *man/DistRSquared.Rd
0b19227230b81a76b44071c6d676b9b8 *man/FilterData.Rd
c774bc90b00e65b2d40875f11c51d4ab *man/FilterDataFolds.Rd
0c59eb8e85f5b3286b0ca462280d8d29 *man/HistogramPairs.Rd
0ebe777ce31a3775598cb665b0d4afb7 *man/IntLIM-package.Rd
1601e7af624ee915d724472d04a47224 *man/IntLimData-class.Rd
7b977414a8627ba147639bd4fd9eae35 *man/IntLimResults-class.Rd
d3c37f39cb0a2b3c29c53a5d093c15bb *man/InteractionCoefficientGraph.Rd
8497a6113c6135c6ec009b2431f67864 *man/MarginalEffectsGraph.Rd
5e39a1e4f55d93c159c0b2b731ef0e9e *man/MarginalEffectsGraphDataframe.Rd
5dcbbb153df54d0bbe7dd35fc2d4ce4f *man/OutputData.Rd
81f3d1ae6be72e6c07cc6eee7e2e9662 *man/OutputResults.Rd
3d316e1350bf2610e6fe041a66b48b3b *man/PValueBoxPlots.Rd
4b73d2fc3eb3320ecc4ce76368e5bc91 *man/PermutationCountSummary.Rd
345aa95ecb1d2479ca34fb5dce31cb7b *man/PermutationPairSummary.Rd
c1f4caaf2b98af5c5b96f878edaa3fbf *man/PermuteIntLIM.Rd
99a3c80a8b3e4ee6c0c2708ab1b3abf4 *man/PlotDistributions.Rd
48a28255179d97dcd5e13f44a79dc0d6 *man/PlotFoldOverlapUpSet.Rd
867a20b4232b2a81b0de619f8a1b5a7c *man/PlotPCA.Rd
b0a0b453d19a12120571a4a7eaba72de *man/PlotPair.Rd
48bfb6cb850e3745fba5fc10208735ae *man/PlotPairFlat.Rd
5010ea9a510e7a0955dd6180d98ae270 *man/ProcessResults.Rd
ea97e1420158a9e26eb6503b1dfb7075 *man/ProcessResultsAllFolds.Rd
79305ef954b3be5eeaefde65500c330f *man/ProcessResultsContinuous.Rd
ffb9ef68821b544f8b44ed2ad2500f25 *man/ReadData.Rd
bb11dc427253ef15958d48fe0c3cf9f0 *man/RemovePlusInCovars.Rd
9615dfdfbc6048f2a27929c18842cc4a *man/RunCrossValidation.Rd
fc4d344fff119f20c877db9f5f84abf2 *man/RunIntLim.Rd
819dab273e3ce35e3f354dcd18cf0458 *man/RunIntLimAllFolds.Rd
15941a4c33863f371648052983647037 *man/RunLM.Rd
e13b16f2b9b210126c5944e4e461226b *man/ShowStats.Rd
17168d92bb4be813afd8295eed1e357e *man/getQuantileForInteractionCoefficient.Rd
6403911eb2b7fa530b9ceef9774c05ea *man/getStatsAllLM.Rd
25c303c3bf59664b3fb74cde04d6e80f *man/getstatsOneLM.Rd
cc6d93713e0f3ddfe765a05e9f78000c *man/multi.which.Rd
324b9daec7b2915fa013acd721cfe38c *man/pvalCoefVolcano.Rd
f1a3c37fa298e0c65f27c1cb0f9d4018 *man/runIntLIMApp.Rd
e4b0b5fba12746d11dda0bff5ad5d58d *tests/testthat.R
8673b44bd53e48e0c3031297445b223f *tests/testthat/test-crossval.R
c094b35d79f1ff26c70752d0f63e0258 *tests/testthat/test-filtering.R
42e718aa68858ba284093a5d10e57821 *tests/testthat/test-perm.R
4bdec5ccc36dfb514d29417c433cb8de *tests/testthat/test-processing.R
4015cbf120b2cff2382b4ea11872d3a7 *tests/testthat/test-reading.R
48511f9a82636357c4cca2f20ed4dbd1 *tests/testthat/test-run-intlim.R
37c3aecc385f16701ab141f49875e48b *vignettes/IntLimVignette.Rmd
