b1692fd7af9fe96a57db15158d1343bc *DESCRIPTION
c69c796ef3cc21438c61e3fb5b0c83fd *NAMESPACE
3841348d61a0baeb549d34ff4ca30496 *NEWS
fa8bc49f8ae9b958025feaf4e246f69d *R/HMMLikelihood.r
f487318157b812669e6ba63c2a9a0981 *R/InitialDistribution_functions.r
7c446e1ca6dddbe65095480efef9d75c *R/Observation_functions.r
fa8e17bd30e8a8918e398060d018e78f *R/Transition_functions.r
542f5ea2d052b5696c201dd496d1ff47 *R/cjs.R
31b31f85c1343cc8bd3bf298cbd3ba9c *R/cjs.accumulate.R
224ff44eb94325bfb951235f0c1e4f90 *R/cjs.hessian.r
39b1e1ab58f76cf7fdf1db85d060cce2 *R/cjs.initial.R
06d4426059914aa8a3a44af27b590b35 *R/cjs.lnl.r
75d5513713ba808f264a8fe2202499b8 *R/compute.real.R
fbba25aa21041cb01ffbe69fe0afab7a *R/convert.link.to.real.r
835239c3491448e7b74a86c5d3faed00 *R/create.dm.R
392776024a9b3676e0442b26bd1eb38e *R/create.dmdf.R
7ff0b2f71c22523cdda71d01b79d663b *R/create.links.r
20e93ff5891563cd9588f43783afdaae *R/crm.R
5137302623096e0974c0104388f8332d *R/crm.wrapper.R
edc62ba4f9ee716ba24b02971b9c8af1 *R/deriv.inverse.link.R
1bbdcdf2d4afd936df0cfd1aa8fb57d3 *R/extract.fcts.r
258befcf07bbee8575d6a6be8fb3865d *R/fix.parameters.r
1ef637e8534cb63b5cf7b6464a4eb53e *R/hmmDemo.r
360d432d3310271e795a738d233ff5cb *R/inverse.link.R
8690ad8303c447739e3717474508508c *R/js.accumulate.R
fdae5badf36ef937f6c523eb009425e1 *R/js.hessian.R
07c3ac3a3b50710b203d8578cb6a2aa7 *R/js.lnl.r
9021889bdbbb84539e5d147943b9e8fa *R/js.r
d3481f0ad7aa6bf55b7cd6c16c86ff97 *R/make.design.data.R
948281dda05eb9f9f9f5ff261d580841 *R/marked-package.R
45692791473a90588b683e1444d48945 *R/merge.design.covariates.r
d6ca0cad899794dfc7d0dda9df7b56ee *R/mixed.model.r
132d281816e422da1b24bc9c7fc7e1dc *R/mscjs.r
4366a99ab9f9f4ad398603970e510914 *R/predict.crm.r
acc0986f85710a53d8f584335a1e2d08 *R/print.crm.r
710352343d51135473cb8249000ae5d0 *R/probitCJS.R
327529b4b333269227207884f21e35ba *R/probitMsCJS.R
ab90a18b88221fd00bad6d01c64bd8bd *R/proc.formula.r
29b591966cccf77d750ad191e7a776fe *R/process.ch.R
0e899882aa900434c9f93002fb74b741 *R/process.data.R
d43d8431484f467ad339038ec8c0cfae *R/scale.r
c74ef90ce31f6671f57850c27a563efb *R/set.fixed.R
1fa0691f82dfef94bb8bd0f2c3ac124b *R/set.initial.r
b05d8bc84b4056302fc78f52b2e81fe4 *R/setup.model.R
54d55a869a53f0a00dc7d9faacbd9aaf *R/setup.parameters.R
750cfabf0f317a92c9bb245fa9c1a684 *R/simHMM.r
8770267efd153aede8a51712130386d7 *R/splitCH.R
74f1ee4cdcd104cf4c9868977e1a3a7a *R/summary.fcts.R
6be6618e9481274241ef95e1a327de14 *R/utility.R
71acdd849dbbd3e3e939cf17baa46724 *R/valid.parameters.R
58ccc3fe2c47083554859ccfd3616902 *R/zzz.R
51fb775a6c631c12331bd1fd1962cc5d *data/dipper.rda
fa6cad0f5950e6d8e7fa214c41609d6a *demo/00Index
3096feb9785fd012fec79c423cfa9320 *demo/tests.r
28f953c339e702ed56d381d81ef13fa4 *inst/README.txt
603e54756f4aadda75a3b8c06b397c63 *inst/cjs.tpl
6517bef5fe2676548ea0d71425a83881 *inst/cjs_reml.tpl
3136cc5c22e169723bc7d6aed72f2837 *inst/cjsre.tpl
c6239015ce2a1de9e66725980b19a22a *inst/df1b2gh.cpp
1143c5d073506731d0e8598ee010157d *inst/df1b2ghmult.cpp
9333484369c1b14d8fd1dd3c32e41a44 *inst/doc/marked.pdf
031b17c7059d5f3cc3550c8e3bfcc6bc *inst/minfil.cpp
6c7132d88462e1294cadcfb0d9acd066 *inst/models.txt
0a2ad2967d0b45460051a28ceae22986 *inst/multistate.tpl
969f5d05b416519f7c586a5678b065c8 *inst/parameters.txt
e2c6956b7e502038a3b256fcec5c37b6 *inst/xmodelm5.cpp
034b77bbd1afdd9fe036f8ab0f0ac8b0 *man/HMMLikelihood.Rd
a013a720dece4217db00f9374bf2cb4b *man/Phi.mean.Rd
ad7ee08cfd029a0121846a0cc3a45716 *man/R_HMMLikelihood.Rd
3a99b4078a0a498089702ef310d07392 *man/cjs.Rd
fe8506ed70af19e8c63da1e4be924965 *man/cjs.accumulate.Rd
ac7a73ab49a227d3b6cd17e23b6a6dfc *man/cjs.hessian.Rd
3864b03dafe513a1097bd12a9811a619 *man/cjs.initial.Rd
413d9e64756fff4501d5b1a5e68db45b *man/cjs.lnl.Rd
7e48fdb9713dfcf82b8a1e561e533850 *man/cjs_delta.Rd
161eb5cc920175e97bc75ad2f3954c71 *man/cjs_dmat.Rd
d7bf79c097b3c7f2fc71be652fccda40 *man/cjs_gamma.Rd
55ee79aca2ec4a915ee836fd3a399dae *man/compute.real.Rd
965637c9084f7103263c9dbde24fb47a *man/convert.link.to.real.Rd
22cd7e8b11f80520defdd6d896dbdff0 *man/create.dm.Rd
025ebf791a51c7b8dcd2bd6ffe81ee4c *man/create.dmdf.Rd
825bff82ce557c6df239d5d16199d3ef *man/create.fixed.matrix.Rd
99a1ca1bcb8cdde0dcb2b9879204abaf *man/create.links.Rd
621615a6974d687a40b38c66f2ddfff2 *man/crm.Rd
f544cdbacf517607343a46fe9de9d617 *man/crm.wrapper.Rd
86bbfa11c1659381e21326b9ca57d938 *man/deriv_inverse.link.Rd
777703b918f575086760e8947d971b82 *man/dipper.Rd
67e3b307105e74289a68b975fb1ebe94 *man/fix.parameters.Rd
903519986ddadd1acca5b552fe25d1bf *man/function.wrapper.Rd
05442394d4ab50d3917853862a2e3dd4 *man/hmmDemo.Rd
a9e5ecf04e817c9fbbd8e108950ad5e7 *man/inverse.link.Rd
45d72bfd3e6370f4e9db54c62269d1b8 *man/js.Rd
c3a94fac45f0318cb144bc2bb976acc2 *man/js.accumulate.Rd
787a314d284e781691e68918d90f435f *man/js.hessian.Rd
4d6426c75ca279d34737a50188701fe7 *man/js.lnl.Rd
80e48e19381a939a84afd2ecb70fab52 *man/make.design.data.Rd
318823e5c2e941830a8ffe9fdf8fbf68 *man/merge_design.covariates.Rd
4abff6198fb11789cd27b02181ff0ffb *man/mixed.model.admb.Rd
3400ec319f11197abc103ab63c56b256 *man/mscjs.Rd
f404a0ae6ab7039c1248da06c01a6ddd *man/predict.crm.Rd
d401a7eb4cc3f1444bacd9801562b796 *man/print.crm.Rd
03b60b718ad01ef5fd1f849ac291b31e *man/probitCJS.Rd
d99f3b523dd9bc3cc08e19acc5e44864 *man/probitMsCJS.Rd
8fc9bbe729c748a94770ce02e6cc9af5 *man/proc.form.Rd
aa8495573b3f7ec560d7bb60cfeba8b3 *man/process.ch.Rd
59f0de4384e653eda897bef8dcde801d *man/process.data.Rd
0a579ed2ce798a9dbb2e3f5c75d6b6bc *man/resight.matrix.Rd
40235130479b63381c79145b0811616b *man/set.fixed.Rd
284d5595cd07c7e9ee028cdcc4cdc3cb *man/set.initial.Rd
fa3bc1aeeb97655f0591bc35c8c9c5ae *man/set.scale.Rd
1bee49acbd8edcf4454df740c5aadc84 *man/setup.model.Rd
a4304f6cd737e5e3e1b4f29da82148cf *man/setup.parameters.Rd
740fe8e32035032aad7f3b3b617db391 *man/simHMM.Rd
f2733c8fd38d79ddd0285cba7e43fb43 *man/splitCH.Rd
6047609769ad517a3d42c737d969a0e0 *man/valid.parameters.Rd
b3f86c20b81b51f5162874977d38784d *src/Makevars
73505498722ad4b07b0ddb3067e92523 *src/Makevars.win
2e80757fbe08940fe169c82732e3fce2 *src/bayesCR.cpp
ace5af2bc79c40e34beee755fc027d15 *src/cjs.f
aeb6bf08322a12c91efe77bd05ffa273 *src/cjsdmat.f
46949532ae0e9c6c9c92d98767ac9d51 *src/cjsgamma.f
25706f6995832d0c534c7e37b940f834 *src/hmm_like.f
d00adbdbce4e07a51403c4f994c35f9c *src/ms2gamma.f
955315de2dce7a9011450b46daef69d4 *src/msdmat.f
779a460e635a31002af816f6a0334192 *src/msgamma.f
53e9e7838edfe4dd24cb1b6b325b73bb *src/ums2dmat.f
96f6f1ff894007c56323dc183ce288fc *src/umsdmat.f
b50610c8b9911841cf8d27bb7a7eb035 *vignettes/marked.Rnw
f3ac5cfe03c5f4898e80280ddbfd9a30 *vignettes/markedWriteUpBib.bib
