342eee636b75979fe4393bb460e094c3 *DESCRIPTION
0655288a67f89bfd5049e2c7e01a35fb *NAMESPACE
9d1b68db34825f640e52f4a1d1fd3a34 *R/ABC_SMC.R
8866f33e143278bafba73505e5ca579d *R/get_average_nltt_matrix.R
2c5c38d961ccc353f0065e40b6d24e41 *R/get_branching_times.R
c0fd163b900064cdd8b10984db1e93e6 *R/get_n_lineages.R
78f6bbb1f33c24a104b9fcfe659cae0b *R/get_nltt_values.R
41bfcdc7fc21b42e0808faaf59ef06e7 *R/get_norm_brts.R
dd6d00e9f810ee2df9ea3c6ce5310cb6 *R/get_norm_n.R
083ad2369478d90a5bfd7ce309aed113 *R/get_phylogeny_nltt_matrix.R
1ec932489e7d3eb54ce165ee1aa5967a *R/nLTTDiff.R
c3bf8e4403f0a789b2f0940da73d7642 *R/nltts_plot.R
0cc4aee94105aeadc01ff37936c8d1dd *R/plot_nLTT.R
737ecb405b7aee7d4e4c9f8a84f06055 *R/stretch_nltt_matrix.R
556c859d17e62c0e4663b5992adbcbfa *build/vignette.rds
a682e93715d8266c234a7e2b3410a43d *data/exampleTrees.rda
3386b4a04baa2b08688c61edd25b2dea *inst/doc/get_nltt_values.R
50d4f71bc29726b5c9cfb40701bae168 *inst/doc/get_nltt_values.Rmd
83dfb2a7211f85c06edddb238a2d73f6 *inst/doc/get_nltt_values.html
1e8be42f4eb7acf59d1e004b1dd2ac06 *inst/doc/nltt_diff.R
2e1815a78f14244f02789c621976f5c3 *inst/doc/nltt_diff.Rmd
e7ebef75dee7296d7d02bf58400c1e22 *inst/doc/nltt_diff.html
902c59f6abe03eb5b1f7cc4a62126d33 *inst/doc/nltts_plot.R
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583a228f551296b80149536424c97597 *inst/doc/nltts_plot.html
60fc5ea3ef0f1ab40c94d32d9c59c9da *inst/doc/stretch_nltt_matrix.R
56af887ca68d2cbb8ff8bf9cc71d53a7 *inst/doc/stretch_nltt_matrix.Rmd
e9525fb3c100a9e6be282ed90e55111f *inst/doc/stretch_nltt_matrix.html
87735aa3308cadffe7fc72d85bfc1c67 *inst/doc/trees_with_root_edge.R
068430379ec0d84e33bf712fb062034f *inst/doc/trees_with_root_edge.Rmd
e9e3a3aa8d675f1b4f2016bd037f0f99 *inst/doc/trees_with_root_edge.html
dd1c346ee2f6039e2b23bae372b73a7b *inst/doc/vignette_get_nltt_values.R
cab2b52004e515ee8be7161910dd015d *inst/doc/vignette_get_nltt_values.Rmd
3379c43fab1fdf013f272ac3a8defeea *inst/doc/vignette_get_nltt_values.html
28ea0c4ddb362a99ffa1022062dbf693 *inst/doc/vignette_nltts_plot.R
b4c4e5443584ae181c777e7d8cc279c6 *inst/doc/vignette_nltts_plot.Rmd
c18e9940d9bc37e4367d2e230e16d89b *inst/doc/vignette_nltts_plot.html
55abbeee6ba2e0af640471ac5504e0bd *inst/doc/vignette_stretch_nltt_matrix.R
56af887ca68d2cbb8ff8bf9cc71d53a7 *inst/doc/vignette_stretch_nltt_matrix.Rmd
c1952ff74043f2b0e4f08fd892d82613 *inst/doc/vignette_stretch_nltt_matrix.html
f65ade8d96f6c79832f730bad04f7917 *inst/doc/walkthrough.R
1d127dbd1db4126a6c5b93b209171c6f *inst/doc/walkthrough.Rmd
23f1c2d996694bd16e668cf077256108 *inst/doc/walkthrough.html
9a95521c441584d3c1ad004ff8fa66d8 *inst/extdata/issue_38.RDa
f0390884f92421cff34972c5ada87a02 *man/MCMC_nLTT.Rd
981966b80135af2b81e4acd0892dfcd9 *man/abc_smc_nltt.Rd
2ff4a8e406d65787b8375ad6259e096e *man/exampleTrees.Rd
5fa6acc4192be0602f883349facb47d4 *man/get_average_nltt_matrix.Rd
c45a1084e74bbfcc53423bcfa898693e *man/get_branching_times.Rd
90d5956a289b92700eb702277c2c3fca *man/get_n_lineages.Rd
d437c4951994df95a19422d66ea74012 *man/get_nltt_values.Rd
6363593226fad031cd7bcef5c8e8b544 *man/get_norm_brts.Rd
ab9ef29fc4b8e25a0d3edc6032822a4f *man/get_norm_n.Rd
93a7ae174133e1ba2d25a942a093d44a *man/get_phylogeny_nltt_matrix.Rd
489325c7b8d98907d466517043db159a *man/nLTT-internal.Rd
538f8df0c35dba5c5ddb54f882d55829 *man/nLTT-package.Rd
6dabfd0581bc8d387ddfbe6bf68a72cf *man/nLTTstat.Rd
d9b725deea850d07718ce6fde2f6025e *man/nLTTstat_exact.Rd
2ec73bf97b7ffe85ee6b92fb161e8bf6 *man/nltt_diff.Rd
97ba0eb729be7cf280308fbe20969b82 *man/nltt_diff_exact.Rd
0259399335ffb8613b8b692825e83f43 *man/nltt_diff_exact_brts.Rd
550e394312a8771eb0e5f1e6efd05019 *man/nltt_diff_exact_norm_brts.Rd
30bfc165c8238ae5a792faef962589d4 *man/nltt_lines.Rd
4bfd2d105dfbb903d88f26c4a13a4b72 *man/nltt_plot.Rd
37fa8633f91a79de2cc9aa48297b3dd3 *man/nltts_diff.Rd
91afb101e0606510c2b2af5ea10d260c *man/nltts_plot.Rd
9bc016b4e0bc3c3b130ebe6f8bac51ed *man/stretch_nltt_matrix.Rd
b8b50ed3f56a110f64210a94d25e359a *tests/testthat.R
3a308b130e3153a0b0468e7cdc597e88 *tests/testthat/test-abc_smc_nltt.R
1e4c6b03d7113aee6b15ab892c3323f5 *tests/testthat/test-calculate_weight.R
0ab5e68257ef5f0bf657f55ee733a714 *tests/testthat/test-get_average_nltt.R
36935a95ec601abf13d4ed8985b66401 *tests/testthat/test-get_average_nltt_matrix.R
4f6b895b34744748f88da78da1c8455a *tests/testthat/test-get_branching_times.R
a24a4aed3881063b99013b05755b40ff *tests/testthat/test-get_n_lineages.R
7221bf5979eae518c6fd80eeefa83025 *tests/testthat/test-get_nltt_values.R
c0f61bcd06b0e71075ce65a174d6d979 *tests/testthat/test-get_phylogeny_nltt_matrix.R
a4342eba6a94fb1f8d0cdc991dd4b11d *tests/testthat/test-mcmc_nltt.R
2ce6b9bf6805f95528547ef4e4aed625 *tests/testthat/test-nLTTstat.R
2544cb9aabbfa58757a30525114c9430 *tests/testthat/test-nLTTstat_exact.R
c0ca5fbf72c6cd4d51b50879c99a406a *tests/testthat/test-nltt_diff.R
8264c4a965fe1efc85e9709027690933 *tests/testthat/test-nltt_diff_exact.R
5bbced9bad3d799e5ea2b5f0f64cbf4c *tests/testthat/test-nltt_diff_exact_norm_brts.R
b2df9e6de4c15e27c634b4d35a46bf64 *tests/testthat/test-nltt_plot.R
cb09f28a8d78c8ba54ef131ee8eedfbd *tests/testthat/test-nltts_diff.R
1e19f509e11579aa744d5d501c719bb5 *tests/testthat/test-nltts_plot.R
211dabf423813bdd556de4e8095d6dea *tests/testthat/test-stretch_nltt_matrix.R
50d4f71bc29726b5c9cfb40701bae168 *vignettes/get_nltt_values.Rmd
2e1815a78f14244f02789c621976f5c3 *vignettes/nltt_diff.Rmd
b4c4e5443584ae181c777e7d8cc279c6 *vignettes/nltts_plot.Rmd
56af887ca68d2cbb8ff8bf9cc71d53a7 *vignettes/stretch_nltt_matrix.Rmd
068430379ec0d84e33bf712fb062034f *vignettes/trees_with_root_edge.Rmd
1d127dbd1db4126a6c5b93b209171c6f *vignettes/walkthrough.Rmd
