464c5337d5caab566230b35525810ca3 *DESCRIPTION
5280e851efb0ccf01b6676f5b71099b3 *NAMESPACE
c3beb7d98437fb79157bc9b2524e14f4 *R/rbamtools.r
0b257a3793157f2cc50ee13b56c8ede7 *inst/doc/rbamtools.R
ed23dc444ef513b30f5de0a1a590babd *inst/doc/rbamtools.Rnw
b12fde679f7ad76072a8a68ab3a79a37 *inst/doc/rbamtools.pdf
70636a08b868d8feda7dcb0ad4fd7d7b *inst/extdata/accepted_hits.bam
e402625fa157476dfcd67273bb0f7384 *inst/extdata/accepted_hits.bam.bai
2c599dd15f13dfcebeebb34517a319b3 *man/alignDepth-class.Rd
6ab922048f9db7b14b34dd43ea4eddb6 *man/as.data.frame-methods.Rd
3d7b1246fb6cabfc67074d73651373ea *man/bamAlign-class.Rd
026d965361124fe08de4a3ed29befccd *man/bamAlign.Rd
834772109d6ed6bb079c0adc90241a25 *man/bamClose-methods.Rd
8c5dd113d383f23592fd98884e55b25f *man/bamCount.Rd
1cab1d5a152e0b41890015481843ccf7 *man/bamCountAll.Rd
10401ae9befdf2bb9ce449e61752327e *man/bamGapList-class.Rd
9c911ad399d71c45f84aa581b7f55253 *man/bamHeader-class.Rd
38d5360cb908c6907b17d1d5844a477a *man/bamHeaderText-class.Rd
8c111c40796829e1df5b1efa4717321c *man/bamRange-class.Rd
b463cfa252791c7b35cdcb561a775431 *man/bamRange.Rd
1930dd1bd9771e265ba10e87d6317d24 *man/bamReader-class.Rd
03c9354d0c9cd87f5d65a5e9424ea7c5 *man/bamReader.Rd
6c4813e62d97dc403177441f3285ff49 *man/bamSort.Rd
90705161da5b78dcd2577f079de72fb5 *man/bamWriter-class.Rd
c4b30c11724c427ec90857639f6cb4db *man/bamWriter.Rd
4d82952ca9cacd932a55dbfd02eecf52 *man/create.idx.batch.Rd
1051625fb4ac251d8f55e0295fd4409d *man/extractRanges.Rd
d02d631ce7033fa6ee91860508aa10dc *man/filename-methods.Rd
d4776ea54724df949369171be3150c57 *man/gapList-class.Rd
00b275a8720ebb272ecdc2ce7d5938e2 *man/gapSiteList-class.Rd
51c82816b832dd64ebe7fe015bc69cd2 *man/getHeaderText-methods.Rd
575e6401e1a4fb3b77eca501bcfd239f *man/getNextAlign-methods.Rd
fb17ddc6b8cf1a30ae387660b5791899 *man/getQualDf.Rd
61ece04498943dd1a861bf0b6dc575e0 *man/getVal.Rd
ed88cdfa7a2aa82995daf3100a13184d *man/headerLine-class.Rd
e746e233be84d9ca887d3f5dcd81bead *man/headerProgram-class.Rd
5a0f2d835902efb80b9669e0a4fbac7d *man/headerReadGroup-class.Rd
a0980a4317e856c779589bd9d2a86794 *man/isOpen-methods.Rd
aa3fabbc8cc26deac3ed90eb6144e4eb *man/nGapAligns.Rd
50e7b26f54cb948434d7a5314c091661 *man/range2fastq.Rd
46a3bed4a8805964cde4772e76b82398 *man/rbamtools-package.Rd
6609cee73dba1f67ff87c8e87be9cef7 *man/readPooledBamGapDf.Rd
911be680cf9a4fb08c6ae3bcdf02291c *man/readPooledBamGaps.Rd
efffd0c831dd058062361625f0b1e308 *man/reader2fastq.Rd
9c222e0b4daa9244c8100bb28d26a8a2 *man/refSeqDict-class.Rd
bb61babfa2eb94a8095a299572d405f2 *man/setVal.Rd
1909330c349a0b8654595c7accb89fb1 *src/Makevars
b2ab8d847907bfe5f92a3c04cdf4d2a0 *src/Makevars.win
f8321265bbaa95c68d20113fb02fafdc *src/align_list.h
ea3b81784bdaebedf1be7dca8067e7c1 *src/bitmask.h
57464bccb476d237c0ed3c843f1af094 *src/gapSiteList.h
c6e5b0ee71d81e741b041cdd8175aafe *src/gapSiteListList.h
06491b52f6860dd0fcf81f62f1e9e069 *src/gap_list.h
b5b7924f4986109f57e784d8251816cd *src/rbamtools.c
8e91f032cfa13639f8eaf73761da6a08 *src/rbamtools.h
2e4c02f66ddf5b45e5f82ff579740386 *src/samtools/LICENSE
8d77fcb173730f7429f5436942ce46d2 *src/samtools/bam.c
392dc34895ea0b679b1881a9714e79b3 *src/samtools/bam.h
cf98ab784ab45ae45d1a56733ce9b0af *src/samtools/bam_aux.c
7310a1f6f1407803b50c6fb66593c39a *src/samtools/bam_endian.h
34f18a9811c5cf5c915a15ce5c3de2ac *src/samtools/bam_import.c
94f0a1fce821685bea521911cf7f1425 *src/samtools/bam_index.c
06af951b135e5bbfdc1f280450dbe569 *src/samtools/bam_sort.c
5772fa306bb37b27af4122aaa28c7193 *src/samtools/bgzf.c
f732fd642ddadc7937b27a35d586a834 *src/samtools/bgzf.h
77c3ff341ae1d2d7138a46fb91a19d4d *src/samtools/faidx.c
060c5e036ec8bd44ec5e25549a1e160f *src/samtools/faidx.h
6615679e1cf61f3c91ff8e2ca55a31a2 *src/samtools/khash.h
4cbba656024a5136ba479c11b48aaaa9 *src/samtools/kseq.h
24ef45db4e129ff34aa982837cc48f7e *src/samtools/ksort.h
7fd7e5f5701b912345a4005add5076c1 *src/samtools/kstring.c
f7c10b1c27b0fa013aba458458b8fe21 *src/samtools/kstring.h
5a7cdd8dc3ba6bfd63555705ce584efa *src/samtools/razf.c
799bfb3cc0b3c7a25f84699588aa1d96 *src/samtools/razf.h
f9718d487a6cbcda29ca3286b6987b32 *src/samtools/sam.c
eb06482d20c8cbceead50f119c2a0229 *src/samtools/sam.h
752b4fd51d86c25f2cd01122f6f6371e *src/samtools/sam_header.c
8dd7c977d83077c0554fad6a1bb78043 *src/samtools/sam_header.h
ed23dc444ef513b30f5de0a1a590babd *vignettes/rbamtools.Rnw
10cfb2f92c2c521a999b62445b9632c2 *vignettes/rbamtools.bib
97cfe2c104a9918f7e7e42494be1c6ed *vignettes/rbamtools.log
dacd660b962b1be14e6a58ca4218a375 *vignettes/rbamtools.synctex.gz
