3be680a216ae8c00921bc769d21e42e2 *DESCRIPTION
1c5fb114d46fa0641b61b07ba8530259 *NAMESPACE
84f03166760dcaf425eac8c9b4a94cc4 *NEWS
db7ba51f9c19b4c982607734daf9c9ca *R/HMMplot.R
a5213fbc85c01f25c9e2ba1a1757542a *R/RcppExports.R
f978e13e72f0d019967bd6b140bf63f3 *R/SSPlotter.R
165a02f81c29866de258f8e32e010ec9 *R/biofam3c.R
b00aa2725efdab1fdfe16a57c0e11f23 *R/build_hmm.R
d60e7c4a34adaf7f363621e23b9c7d56 *R/build_lcm.R
f0969e4bac67dd70c7ad0bf3cc4e5206 *R/build_mhmm.R
c42d34b5f5dd9d77c5c600f824bce860 *R/build_mm.R
61adcdf1c01a39d7c99c22a6485f461b *R/build_mmm.R
c57088eec2ae645eb7fdbaa032620a48 *R/check_deprecated_args.R
3da8086738691f70003b857cd1959a03 *R/colorpalette.R
c501731291a9aa14d341e60442cbe0fd *R/combine_models.R
944b796fc86b75a4d14e6cdc1119f33c *R/estimate_coef.R
053b76bfd7b21ca9b7cfddf43c67af7a *R/fit_model.R
800812905769a74d2d15f963b34aa021 *R/forwardBackward.R
7576f537f3b81e5a3e4741a1d05c4262 *R/gridplot.R
24ab12fa4aab69eab041cdb0e9dbeb0b *R/hidden_paths.R
e9a202767bc83aebed76a38e87798dfe *R/hmm_biofam.R
ab2e784177d1d691fabad95439319d17 *R/hmm_mvad.R
496c8ac7809e2bac50d5a43cf376288e *R/import_seqdef.R
707cca9dfdea084fb6902fb026c1c5cb *R/isColor.R
4bb7e5b0375c0522589eac22399da722 *R/logLik.hmm.R
8c19128629ef3989a691ff9403bb9d4d *R/logLik.mhmm.R
aec5ed442b0c4643f5acd5c16a52e0b6 *R/mHMMplotgrid.R
399675fa3ced2bc8150faf424e9e38f8 *R/mHMMplotint.R
982436a14dae3c5dfc1b6be0b2d1b473 *R/mc_to_sc.R
360c359f97d4f3bb0bf02e02676eccb1 *R/mc_to_sc_data.R
f678fdd2298abadf0ef822e95f1ba3cb *R/mhmm_biofam.R
d3982e5832836ccf9c5cc1fbc22f96db *R/mhmm_mvad.R
3a5c7bd467065ab9310cd2beb9569f5b *R/mssplot.R
229db270a4432c6895bb65567bcf628c *R/plot.hmm.R
9ce430a2ffb4f33bb6fb195583689715 *R/plot.mhmm.R
9aa6e2ec1701a9751742f19d4671829f *R/plot.ssp.R
01aadc3edf15fa027e5786dc5a219cc7 *R/plot_colors.R
4e9cbdd59c6a045ed3d4cdee6c0f5019 *R/posterior_probs.R
1b34a268e69de66c179193c1d15896ab *R/print.hmm.R
bb251626065bd2b982524ff6fc10ae59 *R/print.mhmm.R
1ee30703cd7779651aecca4dcb10a181 *R/print.summary.mhmm.R
b132037d5958d8f623d81b9eb56250d5 *R/separate_mhmm.R
3afdbcedddea2a60142d90f99511e0b0 *R/seqHMM-deprecated.R
d70d06cb67ed61539925d0d9dec89915 *R/seqHMM-package.R
f3c09851e5256bb46561267738ddb941 *R/simulate_hmm.R
269678c8ad8b91adf3f821223c318c37 *R/simulate_mhmm.R
18794c287dc840452d948e9ae372c225 *R/simulate_pars.R
d89f049fad615c06487b2f3ce9056d37 *R/spread_models.R
d9ee1d84b01d5d248394689ef2161f3c *R/ssp.R
2c30c42276eed790e75dea091ae1a7a8 *R/ssplot.R
3f88d77c39dc280e6111711c513e80dd *R/ssplotM.R
9436feabbdcc5d2a701449aa8c68ac77 *R/summary.mhmm.R
0a8f8d4c287368444e0ac6bb418bed01 *R/trim_hmm.R
b3707ff2f8a3d3060d4accd5ca5105fd *R/vcov.mhmm.R
2477c20729f7dc539ff354391d16bc34 *build/vignette.rds
24d8098b9e16c0fd497d674af8c740c9 *data/biofam3c.rda
07df3b55fd8db67073a1d34aaa35630e *data/colorpalette.rda
dd187977cf5880d446b623d1c8982a88 *data/hmm_biofam.rda
fd3c82e79109fd44a48e6d07597f4d19 *data/hmm_mvad.rda
57777ad97b24b5d51d3495527525dbc0 *data/mhmm_biofam.rda
3889dcd736e00a5e199e246dfc5a2f9b *data/mhmm_mvad.rda
e098093f930ccc2fe3efff37b06d0a0e *inst/CITATION
60ff1a64048dcb31aebb9926f9dd88a7 *inst/doc/seqHMM.R
24c5ce32755a2e64bc6c27921379ca5f *inst/doc/seqHMM.Rnw
20960c9bae7db1c5cceea26408fea04f *inst/doc/seqHMM.pdf
dd9f06c2b7ed111820a81bb3c50d0d2b *inst/doc/seqHMM_algorithms.Rnw
d13e4ba2ec9fcc8ae197b715b41e0d74 *inst/doc/seqHMM_algorithms.pdf
d45d8583fa944e84271be94f4cc31968 *inst/doc/seqHMM_estimation.Rnw
785677838f8227260d979fac773e8586 *inst/doc/seqHMM_estimation.pdf
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6da434a2a7259507c2fa8bd2f078b987 *inst/doc/seqHMM_visualization.pdf
352fe7097a4aff75bc41d249e4a218d5 *man/TraMineR_imports.Rd
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293851b339d652e57704c8e74fdcc9cf *man/build_hmm.Rd
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e9ced579b678123aa727ae9721c658c9 *man/build_mhmm.Rd
9bf7bb73f9e4a9527e83497c7ead28bb *man/build_mm.Rd
94416c438c87e03c4c11abbe41e4d3ff *man/build_mmm.Rd
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d6ddf358aef3b23a0b2c60e3fb578f02 *man/estimate_coef.Rd
9ba6280c242c5d4c983b86f612299311 *man/fit_model.Rd
ee9b40c074ec340b4c3c840b6b4235ca *man/forward_backward.Rd
11a9d54d805ed70fca0fb7d0f266f40a *man/gridplot.Rd
1b416193366662c75a37f4dadb2bb64a *man/hidden_paths.Rd
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a0f097af171d4fba95b6dca119e76751 *man/hmm_mvad.Rd
1c968c4e13302c70dc8cda0f3a04e622 *man/logLik.hmm.Rd
1e7843fac13772cf5b1c59e9677dc25c *man/logLik.mhmm.Rd
1d7d44662661196465259b31cb51a832 *man/mc_to_sc.Rd
2353151babce9427aa2c0bef9971ef11 *man/mc_to_sc_data.Rd
9024922f877ae2c54e36c481c7c32138 *man/mhmm_biofam.Rd
5887e9181a838ecd087c040ed86c847e *man/mhmm_mvad.Rd
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d184e252cd9114fc1c5dc31172ed0426 *man/plot.hmm.Rd
83f63a0adca1569d22440f861d877de1 *man/plot.mhmm.Rd
333039ecb9bdcd8635b916a66aa7d97b *man/plot.ssp.Rd
0d79a316cd389e1ed521d1af4a8ea669 *man/plot_colors.Rd
215f4ef8ddc6802b97e7eecafd7cdbbf *man/posterior_probs.Rd
41f568ffd63482a8f155f7d0de32ef6e *man/print.Rd
be0c81c7d477e3359d22738ec19ddaa0 *man/separate_mhmm.Rd
7fca0cf39ee9023714ca3110f2c0fd78 *man/seqHMM-deprecated.Rd
fc5c8407637ebf4493035fcd47525587 *man/seqHMM.Rd
92d0733887cb2dca72a66e0251dfdada *man/simulate_hmm.Rd
93ef2e98bf8ba125e5805262d1837e2d *man/simulate_mhmm.Rd
d1f98aae641180d9c15b8e1d33fc4f38 *man/simulate_pars.Rd
78e9c0ce6e0f3130e2e1c007d91e0fef *man/ssp.Rd
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b2377bfe554a04edbfa62dbb50e723d0 *man/summary.mhmm.Rd
5e17311851590f5e5fdc601e7953afde *man/trim_model.Rd
80f25c9547f89240fce68bd4f932e6f4 *man/vcov.mhmm.Rd
80d4c3f404bf217eee1a0583cc46823b *src/EM.cpp
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9ae100fdd0b23ebcdaefe1704a0077ff *src/Makevars
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3f79087feea85b300ce72675d7b4c8aa *src/forwardbackwardx.cpp
0447b58a8a9e79a15a602263b3528b49 *src/internalBackward.cpp
124765753caaf4109ac6afd0df7ea4e5 *src/internalForward.cpp
fc106ba3b4db61b0b0307b19c7026262 *src/logLikHMM.cpp
7624b73a47eb901e5d971799aa7453a0 *src/logLikMixHMM.cpp
ea9f081247bf5736810800c1022a418b *src/logSumExp.cpp
67eb40ad0a49a39ab3f6f1781c741953 *src/log_EM.cpp
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4484c730f61a62737e2ee613d9b821ec *src/log_forward_backward.h
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9f2a3798a1c8ae8283f5519c53831668 *src/log_internalBackward.cpp
ea2592a72a6f94c6b5a8c29bc1341ff2 *src/log_internalForward.cpp
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266a2c281514dde17739b33567a8be19 *src/log_logLikMixHMM.cpp
4e7063fab88eb6463bf82b7c71dffa6b *src/log_objective.cpp
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141e4fcd4497604cbdc4523f12861183 *src/log_optCoef.cpp
7621a0c59fe10be93c3d0138953e1e9f *src/logsumexp.h
1b75a0e5d8d767659a06a1fb4d83bf5f *src/objective.cpp
9de57306dc1e1c1033718a90dbddebdc *src/objectivex.cpp
624f7a9e118f68efbc0e622c5ddd38a7 *src/optCoef.cpp
3e0a6f1b95933f128a1c818c9d24a1a5 *src/optcoef.h
df8bbdce2e4261696bf145f8e561a4f6 *src/reparma.cpp
b7005c66c1530bd3e0761c5e50db2121 *src/reparma.h
0238f430ed8b5f90c98d043b89da01ea *src/sa_opt_coef.cpp
299120588f91cf4eb31737f4b6f039e1 *src/seqHMM.h
9726182edf6db7d7697a8c65a5995dbd *src/uv_forwardbackward.cpp
47b684c7b2f2cb87e271a8ad9b4bce8c *src/varcoef.cpp
845ee1e5b0703dfdaa79cef03f7204e9 *src/viterbi.cpp
bb3602bc32ef536424511175aa46d72d *src/viterbix.cpp
d6375e6f0d3175df58d191619ff2e15f *vignettes/code_plottingHMMbasic-1.pdf
3b130876f4c539e7f33e203f62d09207 *vignettes/code_plottingMHMMbasic-1.pdf
f514fdb130db63da3633fdbf8773cec0 *vignettes/graphicalillustrations2-1.pdf
c88ca57c87aabbab238e34409d708c11 *vignettes/graphicalillustrations5-1.pdf
b2efb1469f19056008efa90c8b6b4cdd *vignettes/gridplot1-1.pdf
3f4e8022705d464f4a76a2b176edd3b6 *vignettes/plottingHMM-1.pdf
32b729124e200bda3db3a40054ba3ca7 *vignettes/plottingsequences-1.pdf
8507a2a880fda8c2935bea1df8a5c3c6 *vignettes/references.bib
aeacf2ebeebc21c15c98285cc5ff272a *vignettes/references_for_vignettes.bib
24c5ce32755a2e64bc6c27921379ca5f *vignettes/seqHMM.Rnw
dd9f06c2b7ed111820a81bb3c50d0d2b *vignettes/seqHMM_algorithms.Rnw
d45d8583fa944e84271be94f4cc31968 *vignettes/seqHMM_estimation.Rnw
f20eec12cd6f0cfdf24d044e7eb77d51 *vignettes/seqHMM_visualization.Rnw
56aca841b4853802d3def5112ec2bdc7 *vignettes/ssplotHMM-1.pdf
