62105e5ec129262b2f6d097bdf4de223 *DESCRIPTION
530375284628cf943a2666765d55b5f4 *NAMESPACE
aa849b38c6b08dccf3a5f493e6408cb5 *NEWS.md
f2bcbbb187bd80ec760fbda565c77d6a *R/average.neur.property.R
7c2937a591bfff39b7fe9828ef242621 *R/calc.dist.mat.R
fab47e1668773aed3bf565621e4e4c55 *R/calc.distances.R
882dc108756865ebdf3012b95e29b55e *R/calc.dists.R
fb8ebcaa513feac79968114b81fa7428 *R/cat.trj.R
98d0562187cd515b0dd093b0b71736e5 *R/cluster.pathways.R
3ab23943687b4e888c40d0e35ca9efac *R/cluster.representatives.R
669cb71a6b55ba44aaa847b21581d448 *R/fit.trj.R
5c11c3f80f03b2b3b96e0739c16cedf2 *R/native.cont.R
0a84e0ae31ac5485adf4134a59275113 *R/network.functions.R
6bb0aace05d125be788a10fadc8339c9 *R/neur.population.R
82ef94e6516eb5b396bdd20132ae8f92 *R/neur.representatives.R
c946c7944d5c006bc6b6edd96ffa46c6 *R/print.struct.R
013ff947cb4949fc311da9ba8f45fbf7 *R/print.trj.R
86bf80c1de8140a6fb49cd733a6a44bf *R/read.gro.R
791d2e44cb4646159bba2a90ab2453ed *R/read.struct.R
2e75a7082df601141800b132f4e744c9 *R/read.trj.R
ad3e77b2039f5149cd40dd8103ca39d4 *R/remap.data.R
a3cff72cd6f93f6dd057a266d323b72b *R/rio_xtc.R
fdbfcac328d0ed8842d71bbf1369c621 *R/silhouette.profile.R
d01122fd1687f33ed1cd2fbc9f916d51 *R/silhouette.score.R
776403924db1afaa426cf43c259c92b6 *R/som.add.circles.R
529591d5be294b6fe0b6524c57e39ef1 *R/som.add.clusters.legend.R
dfd160c9161d80907d691c10ac2c6369 *R/som.add.numbers.R
30dbb6f6c8b17a9a14615bf1e701164f *R/stride.trj.R
787d58cbf9b7809d33bfa23531d1d37c *R/struct2pdb.R
b249daf6d5164be78ad05568c9b665ab *R/summary.struct.R
121a15df01917d6c687d102b531667ef *R/summary.trj.R
2fa9e076e891c4ce2ab603d8adddacb1 *R/trace.path.R
88244b8f2daa1d64585d81499db58f7c *R/trj2pdb.R
e96d1403b7fd3f77480d6f91316cc6b2 *R/utils.R
d10db229d72b9a3622ba46d77ead59e9 *README.md
91f4b5306a371a8e3ff98b3531457b7e *inst/CITATION
5029362ac0fc426d55dffa27f801ab28 *inst/COPYRIGHT
3c08bf87d9bf3ea077ee8b05f063980a *inst/Rmd/01_Clustering.Rmd
e1458cd40271a80fe92dc5b0e38971bb *inst/Rmd/02_PathsAnalysis.Rmd
4d249d80b877e61f481a8e3cf26b4288 *inst/Rmd/03_NetworkAnalysis.Rmd
cfa85d95663519a558237b7eb0a820cf *inst/WORDLIST
84ad63d11112a26b70b1c43e13d85859 *inst/extdata/HIF2a-MD-2.xtc
c50c29826e9d656588b5e59289e275c4 *inst/extdata/HIF2a-MD.xtc
1ff050bd80e33dacbbe863b70683df85 *inst/extdata/HIF2a.gro
895433f5fa8f02c47b478e326928fe8b *inst/extdata/HIF2a.pdb
66254b4999c538012dd29eb63e0ef86a *inst/extdata/SOM.rds
ac6e736edecb00f0bcec43e9334b942b *inst/extdata/SOM_HIFa.rds
8b8a660ad275cc9a7a70eed2e0c74f2f *inst/extdata/THS020.gro
2f61c4dc8c5c6ad4b08f26a439eb639b *inst/extdata/THS020.pdb
09b893b062b90eb00a6539e8413dc7f3 *inst/extdata/som_model.rds
6fa55f8f9996033edbb3b4d0c5ae0b39 *man/average.neur.property.Rd
4996513981dfa1260060c0070169a623 *man/calc.distances.Rd
77ea6e3d0ce7cc8d3cb7889491b8e98f *man/calc.dists.Rd
cbcdd33751f7497a146a0d9255808906 *man/cat.trj.Rd
b4fe0cc76cae3687cdf63db904d24d2d *man/cluster.pathways.Rd
808a969b2d6ee4331c7b4805cd66397a *man/cluster.representatives.Rd
8e8dc5e8bca4a39ecbe15906ad3442d6 *man/comp.trans.mat.Rd
399c6efb949f264eb77bb2e64fee2063 *man/fit.trj.Rd
8788907e26f583b876c4333cb9b8f6b0 *man/map.color.Rd
bc2d1ee945034a23099983a8c8e17c5b *man/matrix2graph.Rd
4006065d23c46380d6de2c28cc311a49 *man/native.cont.Rd
8ffa10dc60a1e9974ced98a0b81e276b *man/neur.population.Rd
86109068fba96d00904cc4676dbac4e8 *man/neur.representatives.Rd
83b81dca31a2a74f7cefe7e956215457 *man/print.struct.Rd
8e2ec206a4e362998ab7ebfe9b5c17e2 *man/print.trj.Rd
fa59a877df534935be3e7b3a80bc9002 *man/read.gro.Rd
9752468627de2162b726488e73d56c83 *man/read.struct.Rd
a6c793e393c8f25705d780ddba1c2d49 *man/read.trj.Rd
3b6fb1c918da31c6c98f8e0e8b789bee *man/remap.data.Rd
d31ae033da82aec15bf849a440d0a6aa *man/rio_read_xtc.Rd
86d55020de48fb9bc4612ca17bc810d3 *man/rio_read_xtc2xyz.Rd
7fc67a770906139bbe1b72d793a22710 *man/rio_read_xtc_natoms.Rd
23da8eac8496b7e1bb9ac7909b84c4f7 *man/rio_read_xtc_nframes.Rd
da47e1596f317d23fa51a7f0898e7b50 *man/rio_write_xtc.Rd
9cbadce9ace5ec5a49f2a30f9839ea09 *man/silhouette.profile.Rd
e305fd048add6882df63249203c2b1c4 *man/silhouette.score.Rd
794ad33c406ad5f58cda62198a3bff47 *man/som.add.circles.Rd
bb92f38197837f88148f5a1cbd7c82fa *man/som.add.clusters.legend.Rd
db95c24210c7fc17060ecbcfe5b8dbd4 *man/som.add.numbers.Rd
27ff601d9850484037877709db06bf9b *man/stride.trj.Rd
b19eae7300db528141da22d4e4a95000 *man/struct2pdb.Rd
5d0199c0b537b2c48be6e5484053bd95 *man/summary.struct.Rd
8e377e55479f5a019ec1a8caa80533c2 *man/summary.trj.Rd
972af9a05dd4bef59acc71f099fbead1 *man/trace.path.Rd
42d5ef16c4c2fc7c57b4bfa33a1cf94b *man/trj2pdb.Rd
61f262e6114711190ee81c317f26564e *man/trj2xyz.Rd
a7d657d3d647931cd3e2338c46e9bdda *src/Makevars
4d93e3d1592798ea08762294a9faf826 *src/init.c
04d4afbc22f2d256cedfc2bb5642b69f *src/rio_xtc.c
97de7ae4d0fe12091d762f8d851a17d1 *src/xdrfile/xdrfile.c
d6f1c97c2ebf5f90f850ac3d0677c5d7 *src/xdrfile/xdrfile.h
e8b56e99feab5684502a5fc7ec33bb11 *src/xdrfile/xdrfile_trr.c
ac114a9acfded52d47bbfe269b170741 *src/xdrfile/xdrfile_trr.h
1e02b6a4e77ba5555e3eae3911a7db13 *src/xdrfile/xdrfile_xtc.c
d3cf270f8b21968dff203ec0ec8da8fd *src/xdrfile/xdrfile_xtc.h
13fdd37da8717d923564726383b24d11 *tests/testthat.R
82e9c77c956f115bae8427054ba4d5c1 *tests/testthat/test-calc.distances.r
0bb60dcb27d96c817b9d4b990adca24c *tests/testthat/test-calc.dists.r
855c8759876ea5109bcfb97a69e56218 *tests/testthat/test-cluster.pathways.r
73b2ac6c1dcfbc8c4ba5e6cae87eeca9 *tests/testthat/test-cluster.representatives.r
a8e9aed569f651b4e2531952e4e53d65 *tests/testthat/test-comp.trans.mat.r
79adb8322b6e4cf410039ade210f866b *tests/testthat/test-matrix2graph.r
fe16841b806cb1c99db33f9217500436 *tests/testthat/test-native.cont.r
13a69037e1b450856856e95d4bb92220 *tests/testthat/test-neur.representatives.r
661c47cf971f960de0979c9375ff2d78 *tests/testthat/test-read.gro.r
30580482fba7bb213c02d8ccbda3611c *tests/testthat/test-read.struct.r
371651d82f6ab5565edcd26940733b6a *tests/testthat/test-read.trj.r
24d2567888a1df07052016982c013322 *tests/testthat/test-remap.data.r
950f8bbaa5573300a0127b774e219d0e *tests/testthat/test-struct2pdb.r
