7e052c998c6818f68ffc6c2fcb3262ed *DESCRIPTION
7aea382d2e9c57ceda8304438279a037 *NAMESPACE
0f35f21b347046eb85fb7546c0aa65ea *NEWS.md
4c6c3e38e5063c3137b33aa750c3affa *R/0_imports.R
e8599cd09cfba3b3950bf416fd771a62 *R/1_allclasses.R
3d93603cc809bc4f01b2fc941ede0993 *R/2_all_generics.R
85e3403e8e2375f5a7d7640831209b47 *R/4_methods.R
a91e014d93ef7ac268bca07fbad5fc1e *R/5_methods_genotype_data_subset.R
0c5c0b42cb4f6f5a95c8e6ac8012cb9c *R/associations.R
c03c6a57b4d7fb188450cf89ad05bd70 *R/biomart_annots.R
a4bcc233306b8d1b9c84aae8971cddd3 *R/fetch_hgdp.R
7e6107a327af2c319ed16d6ee610f0fd *R/geno_data_convert.R
0efb7259b5cbaa56ca19319d75f2b6b4 *R/geno_data_fetch.R
3ab7b705b7e87eb9f0830641206535c6 *R/ggplots_ld.R
85194101070403879f4e8507b3d78828 *R/gtable_associations.R
755094fac3b84dac75d95cee230af592 *R/gtable_ld.R
b4fe12876c37f8a22cde06e9701eecf0 *R/snplinkage-package.R
8de8a9a444a2751fcb01caa21d6c4c68 *R/snprelate_ld.R
1efe7883a849c2337c6a609080ef160e *R/snprelate_qc.R
249c5dd663f0f6746b7980140a2333ba *R/utils.R
aa5e5a2cbfaea3d9b6cdbe378ac48cee *build/partial.rdb
2353a5db3f1a6ef01f9f284746a83b07 *build/vignette.rds
e9fdf75f37ecb36778fb82e00a490a27 *data/crohn.RData
a08d23c4a9dcfd06685ff177992da292 *inst/doc/customize.R
475125ea6dfc76ee3fdc72e31f5ba10f *inst/doc/customize.Rmd
8ca8c566330d40fd4392b6d7054785c7 *inst/doc/customize.html
5589cbd8cb561243a3e03b5b9b2e7c4a *inst/doc/snplinkage.R
5767060077f896639dc4bb5b79dca4ae *inst/doc/snplinkage.Rnw
545868c15110c848062ed3c0f765dd9d *inst/doc/snplinkage.pdf
eb0b80b828f902c85e01bab1a244f386 *inst/extdata/bmart_meta.rds
7ac23c72a8c313e571b2940c70c07f5d *inst/extdata/hgdp.txt
65c6876d49a1b483ec086210a056c90e *inst/extdata/hgdp.zip
bfa49dfbce307d6cd4cbbf19eb4fdbd3 *inst/script/fetch_and_reduce_hgdp.R
d42c246acd14124deee3ee7c3161cf29 *man/chisq_pvalues.Rd
7a83626b9750a1cfae65b28edcc77b68 *man/chisq_pvalues_gdata.Rd
b897a72554f65f5dc7da88275bc4efbb *man/compound.Rd
b8bfe94209ba161e9609cb5300cd249b *man/crohn.Rd
70718412cd8f58aad54fd96b67ffd75e *man/diamond_annots.Rd
af015db34e796fd7090e25258f8ac723 *man/exposition.Rd
9326cb083d8f55a8dff652c7eeed971c *man/fetch_allele1.GdsGenotypeReader.Rd
c34312301f8be051f5b42fc3a430b04e *man/fetch_allele1.GenotypeData.Rd
21eab8d670f36b147c80b82f1db5a84d *man/fetch_allele1.GenotypeDataSubset.Rd
dd88b5d5b4acd44a439e3981fb2940e8 *man/fetch_allele1.default.Rd
4c5b5865e97bbd27421b451f24759fbf *man/fetch_allele2.GdsGenotypeReader.Rd
f0b5b18566057f1c147c168c5e9886ae *man/fetch_allele2.GenotypeData.Rd
3fd4f050f7c347170c4d6c031682b0aa *man/fetch_allele2.GenotypeDataSubset.Rd
9be8264ac8035199aafa36847b55af6c *man/fetch_allele2.default.Rd
2c0086e32e3398f841b86cf8f594235a *man/fetch_gds.GdsGenotypeReader.Rd
62c254c8e70618f1ba43d2d3bc40ad0b *man/fetch_gds.GenotypeData.Rd
3ca0e10fae17ab416780840f1d186fb9 *man/fetch_gds.GenotypeDataSubset.Rd
3836e7118efd082455eae2c75c2430f1 *man/fetch_gds.default.Rd
2c21740161d929299729a80cb9e844e7 *man/gdata_add_gene_annots.Rd
647001d11eeebdb607f1d55def2dc4e8 *man/gdata_add_gene_annots_aim_example.Rd
b7238429159cc763951dde41af482f3e *man/gdata_add_gene_annots_hladr_example.Rd
8e18cf614c4a491d0617b5a1c6dbfeac *man/gdata_scans_annots.Rd
045033a5177e993c7e0b2cd9a8be5dda *man/gdata_snps_annots.Rd
e17bf68b59e0e71f05d9855af53aa2da *man/get_biomart_metadb.Rd
f85d0665e55c8f0bf67ba98efeb98b57 *man/get_scan_annot.GenotypeData.Rd
88893e6e1bf6d580372963704e2db365 *man/get_scan_annot.GenotypeDataSubset.Rd
30b7d6edae2f7af8a8aa4b5f0f4e7682 *man/get_snp_annot.GenotypeData.Rd
6c35a5ee767ae5daf771b7fc8d341434 *man/get_snp_annot.GenotypeDataSubset.Rd
c592940f18c94bd602ad2b25b7cfd32e *man/ggplot_associations.Rd
9cc24cc3f8f68c984a3deb1f859af24d *man/ggplot_ld.Rd
72e03ebaef394edf5df2b94ea3626dc4 *man/ggplot_snp_pos.Rd
b7cf1326ef632e7f0fa50da09fca13fb *man/gtable_ld.Rd
f88ab5c6f5d324b87ad81dbaa2853b46 *man/gtable_ld_associations.Rd
91be8c8ca40a06c8c18f48d397c5eeb8 *man/gtable_ld_associations_combine.Rd
f462bf80e2d1fe0a7c6e36b20b681037 *man/gtable_ld_associations_gdata.Rd
fe6c9fc05465589669a1d1482e9cac6e *man/gtable_ld_gdata.Rd
b04039b33206a7511acc252c8dc3f641 *man/gtable_ld_grobs.Rd
a9ff361df4d8cf455c1f7d32c337a34c *man/is_snp_first_dim.GdsGenotypeReader.Rd
f714b2317f07a1b6dfafee769c93cf9d *man/is_snp_first_dim.GenotypeData.Rd
f21934b465df5629c674b0eb6e9987eb *man/is_snp_first_dim.MatrixGenotypeReader.Rd
f4a186ab0bed74bfc7c90cc3eb7105d3 *man/is_snp_first_dim.NcdfGenotypeReader.Rd
3bc080e517280bb4d1b2a0b8abc4d25d *man/is_snp_first_dim.default.Rd
a0e8d8b883fb5307f2f8d85b811527d5 *man/is_snp_first_dim.gds.class.Rd
92cd8ee3b41bbcd3fd7c31bb7ad05ffb *man/load_gds_as_genotype_data.Rd
6001f65e4d90070b9678daccb027ab07 *man/parallel_apply.Rd
d7b42bac07db2a2aa287114ec34cbdca *man/pipe.Rd
edd3bfe2b31fa4d7bf576c97597d2e82 *man/print_qc_as_tex_table.Rd
b34978329181fe02025552f43a0958a8 *man/save_hgdp_as_gds.Rd
a5c84274d677c91224312605b822ad48 *man/select_region_idxs.Rd
1be0707d118454e77781ee4230fdf85f *man/snplinkage-package.Rd
0dc231fff435be75de3e5c614b4c71a5 *man/snprelate_allele_frequencies.Rd
6daa3aec28f74c975ff40f52c318519a *man/snprelate_ld.Rd
21289bc38aa15ee1d6344cabdd579add *man/snprelate_ld_select.Rd
949c27b76ec8a35a600c361dce3a5ab5 *man/snprelate_qc.Rd
af9a41c124fc139435fd0dc3bc9cdcab *tests/testthat.R
276ff9a1fd8c8449ab73d9cad5e4f28e *tests/testthat/test-geno_data.R
bbdad82395ab1692de0356f5b9711cfa *tests/testthat/test-ggplots_ld.R
db4e6662f5bb9ed0476ec546eab9c5c9 *tests/testthat/test-snprelate_ld.R
eca79e0c7af81e6267ad1048f3ae586e *tests/testthat/test-vignette.R
e490e468edbe55755c28056478110133 *vignettes/biblio.bib
475125ea6dfc76ee3fdc72e31f5ba10f *vignettes/customize.Rmd
5767060077f896639dc4bb5b79dca4ae *vignettes/snplinkage.Rnw
