Last updated on 2026-02-03 14:51:26 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.2 | 3.53 | 42.29 | 45.82 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.2 | 2.78 | 32.43 | 35.21 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.2 | 6.00 | 54.33 | 60.33 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.2 | 6.00 | 62.95 | 68.95 | ERROR | |
| r-devel-windows-x86_64 | 0.1.2 | 6.00 | 60.00 | 66.00 | OK | |
| r-patched-linux-x86_64 | 0.1.2 | 3.25 | 39.02 | 42.27 | OK | |
| r-release-linux-x86_64 | 0.1.2 | 2.65 | 38.51 | 41.16 | OK | |
| r-release-macos-arm64 | 0.1.2 | OK | ||||
| r-release-macos-x86_64 | 0.1.2 | 3.00 | 52.00 | 55.00 | OK | |
| r-release-windows-x86_64 | 0.1.2 | 6.00 | 61.00 | 67.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.2 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.2 | 3.00 | 44.00 | 47.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.2 | 7.00 | 116.00 | 123.00 | OK |
Version: 0.1.2
Check: examples
Result: ERROR
Running examples in ‘EpiSignalDetection-Ex.R’ failed
The error most likely occurred in:
> ### Name: aggAtlasExport
> ### Title: Aggregate filtered final Atlas export
> ### Aliases: aggAtlasExport
>
> ### ** Examples
>
> #-- Setting the parameters to run the report for
> input <- list(
+ disease = "Salmonellosis",
+ country = "EU-EEA - complete series",
+ indicator = "Reported cases",
+ stratification = "Confirmed cases",
+ unit = "Month",
+ daterange = c("2010-01-01", "2016-12-31"),
+ algo = "FarringtonFlexible",
+ testingperiod = 5
+ )
>
> #-- Example dataset
> dataset <- EpiSignalDetection::SignalData
>
> #-- Filtering on declared input parameters
> dataset <- filterAtlasExport(dataset, input)
>
> #-- Aggregating the data by geographical level and time point
> dataset <- aggAtlasExport(dataset, input)
Error:
! `group_by_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `group_by()` instead.
ℹ See vignette('programming') for more help
Backtrace:
▆
1. └─EpiSignalDetection::aggAtlasExport(dataset, input)
2. └─dplyr::group_by_(x, c("StudyPeriod"))
3. └─dplyr:::lazy_defunct("group_by")
4. └─lifecycle::deprecate_stop(...)
5. └─lifecycle:::deprecate_stop0(msg)
6. └─rlang::cnd_signal(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘EpiSignalDetection_Vignette.Rmd’ using rmarkdown
Quitting from EpiSignalDetection_Vignette.Rmd:179-191 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `group_by_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `group_by()` instead.
ℹ See vignette('programming') for more help
---
Backtrace:
▆
1. └─dplyr::group_by_(my_dataset, c("Population"))
2. └─dplyr:::lazy_defunct("group_by")
3. └─lifecycle::deprecate_stop(...)
4. └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'EpiSignalDetection_Vignette.Rmd' failed with diagnostics:
`group_by_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `group_by()` instead.
ℹ See vignette('programming') for more help
--- failed re-building ‘EpiSignalDetection_Vignette.Rmd’
SUMMARY: processing the following file failed:
‘EpiSignalDetection_Vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc